| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,446,939 | C→T | 15.4% | Y70Y (TAC→TAT) | PP_3066 → | lytic enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,446,939 | 0 | C | T | 15.4% | 50.3 / 4.1 | 26 | Y70Y (TAC→TAT) | PP_3066 | lytic enzyme |
| Reads supporting (aligned to +/- strand): ref base C (10/12); new base T (2/2); total (12/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.84e-01 | |||||||||||
TTTATGTTCCCGGACTCAACGCTACTATGGGGAAGTTCGCCATCATCACGCGCCTGCGTATGGCCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCT > NC_002947/3446791‑3447085 | tttATGTTCCCGGACTCAACGCTACTATGGGGAAGTTCGCCATCATCACGCGCCTGCGTATGGCCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAATTACCTGTCGAAGTACg > 1:199558/1‑150 (MQ=255) tGTTCCCGGACTCAACGGTACTATGGGGAAGTTCGCCATCATCCCGCGCCTGCGTCTGGCCGCGTTTCTCGCCCAGATCGGTCATGAGGCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGacac < 1:245649/150‑1 (MQ=255) gTTCCCGGACTCAACGCTACTATGGGGAAGTTCGCCATCATCACGCGCCTGCGTATGGCCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACAcc > 2:117602/1‑150 (MQ=255) ccGGACTCAACGCTACTATGGGGAAGTTCGCCATCATCACGCGCCTGCGTATGGCCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACAccggcc > 2:209194/1‑150 (MQ=255) gggAAGTTCGCCATCATCACGCGCCTGCGGATGGCCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGc < 1:130028/150‑1 (MQ=255) cccgCGTATGGCGGCGTTTGTCGCCCAGTTCGGTCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGAGAGCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGa < 2:174733/147‑1 (MQ=255) cTGCGTATGGCCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGAt < 1:117602/150‑1 (MQ=255) gTATGGCCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTc < 2:199558/150‑1 (MQ=255) ccAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTAtcgtggtcgtgg < 2:139531/150‑1 (MQ=255) ccAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTAtcgtggtcgtgg > 1:565450/1‑150 (MQ=255) aGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGc > 2:240795/1‑150 (MQ=255) ggCATGAGTCGGGTCAGTTGCAGTACGTGCGTGCGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACGGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCTAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCGTATcc > 1:424984/1‑150 (MQ=255) aGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCTTATCCAGGTGa < 1:209194/150‑1 (MQ=255) gTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCTTATCCAGGTGACGGGcc > 2:562500/1‑150 (MQ=255) ttGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGTTCAGCTCTATCGTGGTCGTGGGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCcgcg > 2:229371/1‑150 (MQ=255) aTGACAAGTACCTGTCGAAGTATGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCTTATCCAgg < 1:183923/111‑1 (MQ=255) aTGACAAGTACCTGTCGAAGTATGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCTTATCCAgg > 2:183923/1‑111 (MQ=255) aTGACAAGTACCTGTCGAAGTATGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCTTATCCAgg > 2:183925/1‑111 (MQ=255) aTGACAAGTACCTGTCGAAGTATGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCTTATCCAgg < 1:183925/111‑1 (MQ=255) tACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGt < 2:205260/150‑1 (MQ=255) ggtGTCGTACTTCGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCTTATCCAGGTGACGGGCCGCTTCAATTACGAgg < 1:54111/123‑1 (MQ=255) cGAAGTACAACACCGGCTGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTc < 2:73429/150‑1 (MQ=255) gAAGTACGACACCTGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGTCTTATCCAGGTGACGAGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCg > 1:326450/1‑150 (MQ=255) gTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCTTATCCAGGTGACGGGCCGCTTCAATTACGa < 1:405457/114‑1 (MQ=255) gTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCTTATCCAGGTGACGGGCCGCTTCAATTACGa > 2:405457/1‑114 (MQ=255) gTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCt < 1:19406/150‑1 (MQ=255) | TTTATGTTCCCGGACTCAACGCTACTATGGGGAAGTTCGCCATCATCACGCGCCTGCGTATGGCCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTGGGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCT > NC_002947/3446791‑3447085 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |