Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,674,232 | C→T | 14.7% | R320C (CGC→TGC) | PP_4137 → | outer membrane siderophore receptor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,674,232 | 0 | C | T | 14.7% | 62.9 / 4.2 | 30 | R320C (CGC→TGC) | PP_4137 | outer membrane siderophore receptor |
Reads supporting (aligned to +/- strand): ref base C (15/9); new base T (2/2); total (19/11) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.43e-01 |
AACTATCTGGCACGCGACGACAGCCGCCCGCAACCAGGCAGCACCTGGGTGGGCAACAAGACGACCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTCGGCCGCGAGAGCAAGACCACCGTCGGTTGGCGTACCACCAAGCACCTGCCCAACAGCGGCGCTTCGCAATTTACCCGCAAT > NC_002947/4674085‑4674378 | aaCTATCTGGCACGCGACGACAGCCGCCCGCAACCAGGCAGCACCTGGGTGGGCAACAAGACCACCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATgcgc < 1:520701/150‑1 (MQ=255) ggCAGCACCTGGGTGGGCAACAAGACGACCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCTGCCTGGTCTATCACGACTACCCGATGGACCTACGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTg > 2:39191/1‑150 (MQ=255) cTGGGTGGGCAACAAGACGACCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTAttt > 2:310899/1‑150 (MQ=255) gggtgggCAACAAGACGACCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTcc < 2:594881/150‑1 (MQ=255) ggCAACAAGACGACCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCcgccgc < 1:310899/150‑1 (MQ=255) gCAACAAGACGACCTTCTACCTCGAAGACGAGGGACGCCTGGAAGCCGGCCTGGTCTATCACGACTAGCCGATGGACCTGCGCGAAGGCCACATGGGCCTGAAGGTAGCCTGTACCGATGTCAGCGGCACGCTGAACTATTTctgccgag > 1:236329/1‑148 (MQ=255) caacaaGACGACCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGa > 1:184620/1‑150 (MQ=255) gacgacCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATAc < 1:171705/108‑1 (MQ=255) gacgacCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATAc > 2:171705/1‑108 (MQ=255) cgacCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCg < 1:113501/99‑1 (MQ=255) cgacCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCg > 2:113501/1‑99 (MQ=255) gacCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGTGCCTGAAGGTCGCCtata > 1:564940/1‑104 (MQ=255) gacCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGTGCCTGAAGGTCGCCtata < 2:564940/104‑1 (MQ=255) gacCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGTGCCTGAAGGTCGCCtata < 2:564862/104‑1 (MQ=255) gacCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGTGCCTGAAGGTCGCCtata > 1:564862/1‑104 (MQ=255) acCTTCTACCTCGAAGACGAGGCACGCCTGGAAGTCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTc < 1:104185/150‑1 (MQ=255) cTTCTACCTCGAAGACGAGGCACGCCTGGGAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTCgg > 2:290645/1‑150 (MQ=255) cTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGACCAAAAGGACAGAAGGTCGCCTATACCGATGTAAGCGGAAGGATGAACCAGTGCTGGCGGGACACACTGTTCgg > 1:261653/1‑150 (MQ=255) tACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTCGGCcgc < 1:582848/150‑1 (MQ=255) tCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGa > 1:591675/1‑114 (MQ=255) tCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGa < 2:591675/114‑1 (MQ=255) aCGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTCGGCCGCGAGAGCAAGACCACCGTCGGtt > 1:496331/1‑129 (MQ=255) aCGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTCGGCCGCGAGAGCAAGACCACCGTCGGtt < 2:496331/129‑1 (MQ=255) aTGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTCGGCCGCGAGAGCAAGACCACCGTCGGTTGGCGTACCACCAAGCACCTGCCCAACAgcggc > 1:248720/1‑150 (MQ=255) cTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTGTACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTCGGCCGCGAGAGCAAGACCACCGTCGGTTGGCGTACCACCAAGCACCTGCCCAACAGCGGCGCTTCg > 1:370126/1‑150 (MQ=255) tGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTCGGCCGCGAGAGCAAGACCACAGTCGGTTGGCGTACCACCAAg > 1:71057/1‑125 (MQ=255) tGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTCGGCCGCGAGAGCAAGACCACAGTCGGTTGGCGTACCACCAAg < 2:71057/125‑1 (MQ=255) gAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTCGGCCGCGAGAGCAAGACCACCGTCGGTTGGCGTACCACCAAGCACCTGCCCAACAGCGGCGCTTCGCAAttt > 1:285300/1‑150 (MQ=255) aGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTCGGCCGCGAGAGCACGACCACCGTCGGTTGGCGTACCACCAAGCACCTGCCCAACAGCGGCGCTTCGCAATTTAc > 2:266233/1‑150 (MQ=255) cATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTCGGCCGCGAGAGCAAGACCACCGTCGGTTGGCGTACCACCAAGCACCTGCCCAACAGCGGCGCTTCGCAATTTACCCGCaa > 1:305154/1‑150 (MQ=255) aTGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTCGGCCGCGAGAGCAAGACCACCGTCGGTTGGCGTACCACCAAGCACCTGCCCAACAGCGGCGCTTCGCAATTTACCCGCAAt > 1:493006/1‑150 (MQ=255) | AACTATCTGGCACGCGACGACAGCCGCCCGCAACCAGGCAGCACCTGGGTGGGCAACAAGACGACCTTCTACCTCGAAGACGAGGCACGCCTGGAAGCCGGCCTGGTCTATCACGACTACCCGATGGACCTGCGCGAAGGCCCCATGCGCCTGAAGGTCGCCTATACCGATGTCAGCGGCACGCTGAACTATTTCCGCCGCGACACACTGTTCGGCCGCGAGAGCAAGACCACCGTCGGTTGGCGTACCACCAAGCACCTGCCCAACAGCGGCGCTTCGCAATTTACCCGCAAT > NC_002947/4674085‑4674378 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |