| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,915,793 | C→T | 11.4% | G114S (GGC→AGC) | ccmC ← | protoheme IX reservoir complex subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,915,793 | 0 | C | T | 11.4% | 86.2 / 3.5 | 35 | G114S (GGC→AGC) | ccmC | protoheme IX reservoir complex subunit |
| Reads supporting (aligned to +/- strand): ref base C (16/15); new base T (2/2); total (18/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.32e-01 | |||||||||||
CGCACTATCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACTGCGCCAGC > NC_002947/4915659‑4915929 | cGCACTATCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCTGGTTACCGGCGcc > 2:92972/1‑148 (MQ=255)cGCACTATCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCTGGTTACCGGCGcc < 1:92972/148‑1 (MQ=255) aCTATCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCAcggc > 1:456667/1‑150 (MQ=255) tCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTc < 2:456667/150‑1 (MQ=255) ccAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCgg > 1:115975/1‑150 (MQ=255) cAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGc > 2:456065/1‑150 (MQ=255) gaaggCCGGAGTACAGAAACAGCAGCAACCGAATAGCCGAAACGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCa < 2:409268/146‑1 (MQ=255) cGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGca > 1:205414/1‑137 (MQ=255) cGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGca < 2:205414/137‑1 (MQ=255) cGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGa < 2:264192/150‑1 (MQ=255) aGGAACAGCAGGATGAGCATGGACGTAAGGCTTGTTTTCCTCACCCGCCGGCCACCGCAGGCTGGCTTGCCCAAGATGCCCCCTGCAACCACCGCCACGGCCCGCACCCAGCCAGCAATGGGCGCGGCACGCTACAGGGCGACGTCGccc < 2:301476/150‑1 (MQ=255) aaCAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGt < 2:451083/150‑1 (MQ=255) aCAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAggg < 1:35225/135‑1 (MQ=255) aCAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAggg > 2:35225/1‑135 (MQ=255) agcagGATGAGCATGGACGTAAGGCGGGCAT‑CCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATGCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCa > 1:539614/1‑150 (MQ=255) agGATGAGCATGGACGTAAGGCGGGCAT‑CCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCt < 2:539614/150‑1 (MQ=255) cATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCgg > 1:570241/1‑150 (MQ=255) cacccaccAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGGGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGc > 1:603221/1‑150 (MQ=255) cacccaccAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGc > 1:603080/1‑150 (MQ=255) cccaccAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCca < 1:174927/150‑1 (MQ=255) ccaccaGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCcag > 2:557902/1‑150 (MQ=255) accaGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGcc < 1:105695/104‑1 (MQ=255) accaGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGcc > 2:105695/1‑104 (MQ=255) accaGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCcagca < 2:115975/150‑1 (MQ=255) ccaGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCcagcag > 2:202128/1‑150 (MQ=255) ccaGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCcagcag > 1:256548/1‑150 (MQ=255) aGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAgcagca > 2:358633/1‑150 (MQ=255) cAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAg < 2:570241/150‑1 (MQ=255) cAGGTCGGCTTGCCCCAGATGGCGCCGCTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACACCGGCCACCGCCAGCAGCACATAGCAg < 1:403218/150‑1 (MQ=255) ggTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCACGGCGACGTCCGCCAGTTTCCTCTTCCCCACCAGCCCCACCGCCCCGGCCACCGCCAGCAGCACATAGCAGGa < 2:482779/150‑1 (MQ=255) cTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACTgcgc < 1:456065/150‑1 (MQ=255) cTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACTgcgc > 2:456597/1‑150 (MQ=255) ccccAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACTGCGCCAGc > 1:15398/1‑150 (MQ=255) cgccgtGGCGCTGGTTACCGGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACt > 2:301629/6‑140 (MQ=255) cgccgtGGCGCTGGTTACCGGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACt < 1:301629/135‑1 (MQ=255) | CGCACTATCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACTGCGCCAGC > NC_002947/4915659‑4915929 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |