| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,947,413 | C→G | 100% | *90S (TGA→TCA) | fliQ ← | flagellar export apparatus protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,947,413 | 0 | C | G | 100.0% | 53.3 / NA | 17 | *90S (TGA→TCA) | fliQ | flagellar export apparatus protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (7/10); total (7/10) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GCGCTGGCAACATGCGGGTACCGAAAATCGGCATGGTCATCAGCACCGCGGTCACCCTGAACAACGGCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCGCATCAACCTATGAGCTGCGGGATGTTGGTGTAGAGCGTGGTGATGTACTCCATGAACTTCTGCACCAGCCACGGCCCGGCGATGATCAGCGTGATCAGCATCACCAGCAGGCGCGGCAAAAAGCTCAGGGTCTGTTCGTT > NC_002947/4947284‑4947549 | gcgcTGGCAACATGCGGGTACCGAAAATCGGCATGGTCATCAGCACCGCGGTCACCCTGAACAACGGCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCGCATGAACCTATGAGCTGCGGGATg > 2:211167/1‑150 (MQ=255) aaCATGCGGGTACCGAAAATCGGCATGGTCATCAGCACCGCGGTCACCCTGAACAACGGCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCGCATGAACCt > 2:514372/1‑127 (MQ=255) aaCATGCGGGTACCGAAAATCGGCATGGTCATCAGCACCGCGGTCACCCTGAACAACGGCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCGCATGAACCt < 1:514372/127‑1 (MQ=255) gggTACCGAAAATCGGCATGGTCATCAGCACCGCGGTCACCCTGAACAACGGCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCGCATGAACCTATGAGCTGCGGGATGTTGGTGTAGAGCgtg < 2:203864/150‑1 (MQ=255) cGAAAATCGGCATGGTCATCAGCACCGCGGTCACCCTGAACAACGGCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCGCATGAACCTATGAGCTGCGGGATGTTGGTGTAGAGCGTGGTGATg < 1:21816/150‑1 (MQ=255) aTCGGCATGGTCATCAGCACCGCGGTCACCCTGAACAACGGCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCGCATGAACCTATGAGCTGCGGGATGTTGGTGTAGAGCGTGGTGATGTACTc < 1:285900/150‑1 (MQ=255) gaCCGCGGTCCCCATGCACAACGGTAGGATGAAGGTGGCGACCCAGGTGCCGATATGCGTGTCGGTCAGCTCCAGCATCGCCGCATGAACCTATGAGCTTCGGGATGTTGGTGTAGAGCGTGGTGATGTACTCCATGAACTTCTGCACCa < 2:260203/149‑1 (MQ=255) ccGCGGTCACCCTGAACAACGGCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCACATGAACCTATGAGCTGc > 1:29245/1‑99 (MQ=255) ccGCGGTCACCCTGAACAACGGCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCACATGAACCTATGAGCTGc < 2:29245/99‑1 (MQ=255) cgcgGTCACCCTGAACAACGGCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCGCATGAACCTATGAGCTGCGGGATGTTGGTGTAGAGCGTGGTGATGTACTCCATGAACTTCTGCACCAGcc > 2:387621/1‑150 (MQ=255) ccTGAACAACGGCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCGCATGAACCTATGAGCTGCGGGATGTTGGTGTAGAGCGTGGTGATGTACTCCATGAACTTc < 1:5269/131‑1 (MQ=255) ccTGAACAACGGCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCGCATGAACCTATGAGCTGCGGGATGTTGGTGTAGAGCGTGGTGATGTACTCCATGAACTTc > 2:5269/1‑131 (MQ=255) ggCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCGCATGAACCTATGAGCTGCGGGATGTTGGTGTAGAGCGTGGTGATGTACTCCATGAACTTCTGCACCAGCCACGGCCCGGCGATGATCAg > 1:67039/1‑150 (MQ=255) gCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCGCATGAACCTATGAGCTGCGGGATGTTGGTGTAGAGCGTGGTGATGTACTCCATGAACTTCTGCACCAGCCACGGCCCGGCGATGATCAGc < 2:67039/150‑1 (MQ=255) gCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCGCATGAACCTATGAGCTGCGGGATGTTGGTGTAGAGCGTGGTGATGTACTCCATGAACTTCTGCACCAGCCACGGCCCGGCGATGATCAGCGTGATCAGCATCACCAGCAGGcgcg < 1:387621/150‑1 (MQ=255) tgtCGGTCAGCTCCAGCATCGCCGCATGAACCTATGAGCTGCGGGATGTTGGTGTAGAGCGTGGTGATGTACTCCATGAACTTCTGCACCAGCCACGGCCCGGCGATGATCAGCGTGATCAGCATCACCAGCAGGCGCGGCAAAAAGCTc > 2:524028/1‑150 (MQ=255) aGCATCGCCGCATGAACCTATGAGCTGCGGGATGTTGGTGTAGAGCGTGGTGATGTACTCCATGAACTTCTGCACCAGCCACGGCCCGGCGATGATCAGCGTGATCAGCATCACCAGCAGGCGCGGCAAAAAGCTCAGGGTCTGTTCGtt < 1:211167/150‑1 (MQ=255) | GCGCTGGCAACATGCGGGTACCGAAAATCGGCATGGTCATCAGCACCGCGGTCACCCTGAACAACGGCAGGATGAAGGTGGCGACCCAGGTGCCGATCTGCGTGTCGGTCAGCTCCAGCATCGCCGCATCAACCTATGAGCTGCGGGATGTTGGTGTAGAGCGTGGTGATGTACTCCATGAACTTCTGCACCAGCCACGGCCCGGCGATGATCAGCGTGATCAGCATCACCAGCAGGCGCGGCAAAAAGCTCAGGGTCTGTTCGTT > NC_002947/4947284‑4947549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |