Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,120,102 | G→T | 13.3% | H68N (CAC→AAC) | PP_4506 ← | nitroreductase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,120,102 | 0 | G | T | 13.3% | 78.6 / 4.1 | 30 | H68N (CAC→AAC) | PP_4506 | nitroreductase family protein |
Reads supporting (aligned to +/- strand): ref base G (12/14); new base T (2/2); total (14/16) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.91e-01 |
CGCACAGCCCGCCGCCAGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGT > NC_002947/5119959‑5120251 | cgcACAGCCCGCCGCCAGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCAc < 1:120909/150‑1 (MQ=255) aGCCCGCCGCCAGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCtt < 2:599744/150‑1 (MQ=255) gccAGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAAc < 2:302018/150‑1 (MQ=255) aGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCg > 2:442941/1‑141 (MQ=255) aGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCg < 1:442941/141‑1 (MQ=255) ggTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGa < 2:549474/150‑1 (MQ=255) gTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGTGCCTTGTCCAGTGCAGCCTGGCTGTCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGAt > 1:64998/1‑150 (MQ=255) gTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGAt < 1:115450/150‑1 (MQ=255) tCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATg > 1:539917/1‑150 (MQ=255) cAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAg > 2:591685/1‑150 (MQ=255) accaccacGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCAc > 2:337618/1‑150 (MQ=255) caccacGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACgg > 1:525481/1‑150 (MQ=255) aTCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGc > 2:539314/1‑150 (MQ=255) tCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTAGAGTTTGAGAAAACGCCACGGCCGCAGCt > 1:157195/1‑150 (MQ=255) aaCGGCGCCCGCAGCGGCACCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTc > 2:543574/1‑77 (MQ=255) aaCGGCGCCCGCAGCGGCACCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTc < 1:543574/77‑1 (MQ=255) ggCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGa < 1:30643/150‑1 (MQ=255) ccGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCgg > 1:68265/1‑150 (MQ=255) gCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTTCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCg < 1:415319/134‑1 (MQ=255) gCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTTCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCg > 2:415319/1‑134 (MQ=255) gCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTTCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCg > 2:415302/1‑134 (MQ=255) gCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTTCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCg < 1:415302/134‑1 (MQ=255) tCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAggg > 2:197733/1‑150 (MQ=255) ccTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGTACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGa > 1:250968/1‑150 (MQ=255) cTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGaa < 1:441238/150‑1 (MQ=255) ccAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAgcg < 2:539917/150‑1 (MQ=255) tGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCCCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCTTc < 1:539314/150‑1 (MQ=255) gCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTcg < 1:552313/150‑1 (MQ=255) cGCCCTTGTGCTGCACGGCTTCGCCGAACACCTCACCCTGCCTCTCGCGCCCCTGGCCTTCGATGGTAACAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTgg < 1:502823/150‑1 (MQ=255) gCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTggg < 2:246086/150‑1 (MQ=255) gctgcACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGggt < 1:337618/150‑1 (MQ=255) | CGCACAGCCCGCCGCCAGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGT > NC_002947/5119959‑5120251 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |