Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,247,865 | G→C | 11.8% | R282G (CGG→GGG) | PP_4623 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,247,865 | 0 | G | C | 11.8% | 98.5 / 5.9 | 34 | R282G (CGG→GGG) | PP_4623 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (15/15); new base C (2/2); total (17/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.32e-01 |
ATAGGCTTGCAGTTCCTCGCCCTGCATGAACCGCCGCCATTCGGGCAGCAGGCTGGTGCGGTACGCTCGCACATGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGAAATACCTGTGAAGTGGCACCTGCAGCGGCACGAAATCGAGTGTCAAACTCTCCGTAGACAACGCCGCCCGCT > NC_002947/5247716‑5248008 | aTAGGCTTGCAGTTCCTCGCCCTGCATGAACCGCCGCCATTCGGGCAGCAGGCTGGTGCGGTACGCTCGCACATGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCg < 1:177175/150‑1 (MQ=255) tAGGCTTGCAGTTCCTCGCCCTGCATGAACCGCCGCCATTCGGGCAGCAGGCTGGTGCGGTACGCTCGCACATGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCgg < 2:508334/150‑1 (MQ=255) gCCCTGCATGAACCGCCGCCATTAACGCGTTAGGCTGGTGCGGTACGCTCGCACATGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGAc > 1:420270/1‑150 (MQ=255) cATGAACCGCCGCCATTCGGGCAGCAGGCTGGTGCGGTACGCTCGCACATGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAg < 2:592008/150‑1 (MQ=255) ccgccgCCATTCGGGCAGCAGGCTGGTGCGGTACGCTCGCACATGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCCGGCGTctggc < 2:229546/130‑5 (MQ=255) ccgccgCCATTCGGGCAGCAGGCTGGTGCGGTACGCTCGCACATGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCCGGCGTctggc > 1:229546/1‑126 (MQ=255) ttCGGGCAGCAGGCTGGTGCGGTACGCTCGCACATGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGc < 1:534966/150‑1 (MQ=255) gTACGCTCGCACATGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAg > 2:509824/1‑150 (MQ=255) tCGCACATGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCAct < 2:423669/150‑2 (MQ=255) tCGCACATGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACg > 2:20439/1‑150 (MQ=255) gCACATGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGa < 2:216202/150‑1 (MQ=255) gCACATGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGa < 2:420270/150‑1 (MQ=255) cacaTGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGAt < 1:361054/150‑1 (MQ=255) acaTGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGAc < 2:320059/92‑1 (MQ=255) acaTGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGAc > 1:5857/1‑98 (MQ=255) acaTGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGAc < 2:5857/98‑1 (MQ=255) acaTGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGCCGGCATCGAc > 1:320059/1‑92 (MQ=255) aTGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGaa < 2:158035/150‑1 (MQ=255) aTGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGaa > 1:366388/1‑150 (MQ=255) cGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGAAATACCtgtg < 1:20439/150‑1 (MQ=255) ccaGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGAAATACCTGTGAAGTGGCACCTGCAGCGGCACGa > 1:213347/1‑150 (MQ=255) gagGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGAAATACCTGTGAAGTg > 1:260866/1‑129 (MQ=255) gagGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGAAATACCTGTGAAGTg < 2:260866/129‑1 (MQ=255) gCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGAAATACCTGTGAAGTGGCACCTGCAGCGGCACGAAATCGa < 2:269440/150‑1 (MQ=255) tCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGGTGGATAGCCTGCAGATCACGGATGAAATACCTGTGAAGTg < 1:588639/124‑1 (MQ=255) tCAAGCAGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGAAATACCTGTGAAGTg > 2:588639/1‑124 (MQ=255) tGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCt < 2:110737/36‑1 (MQ=255) tGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCt > 1:110737/1‑36 (MQ=255) tGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGAAATACCTGTGAAGTGGCACCTGCAGCGGCACGAAATAGAGTGTCAAACTCTCCGTAg > 2:108948/1‑150 (MQ=255) cTGGGCCAGACGCCGGGAGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGAAATACCTGTGAAGTGGCACATGCAGGGGCACGAAAATGAGCGAGAAACTCTCCGTAGACAAcgc > 2:314888/1‑150 (MQ=255) cAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGAAATACCTGTGAAGTGGCACCTGCAGCGGCACGAAATCGAGTGTCAAACTCTCCGTAGACAACGccgcccg > 1:55038/1‑150 (MQ=255) atgACGCCCGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGa > 1:158517/3‑70 (MQ=255) atgACGCCCGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGa < 2:158517/68‑1 (MQ=255) gACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGAAATACCTGTGAAGTGGCGCCTGCAGCGGCACGAAATCGAGTGTCAAACTCTCCGTAGACAACGccgccc > 1:66249/1‑147 (MQ=255) gACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGAAATACCTGTGAAGTGGCGCCTGCAGCGGCACGAAATCGAGTGTCAAACTCTCCGTAGACAACGccgccc < 2:66249/147‑1 (MQ=255) gACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGAAATACCTGTGAAGTGGCACCTGCAGCGGCACGAAATCGAGTGTCAAACTCTCCGTAGACAACGCCGCCCGct > 1:18203/1‑150 (MQ=255) | ATAGGCTTGCAGTTCCTCGCCCTGCATGAACCGCCGCCATTCGGGCAGCAGGCTGGTGCGGTACGCTCGCACATGCCGCGTCGCACGTTTCTGCAGCGTAGCCACCAGAGGCTCAAGCCGAGCCGCACTGTCGAGCTGGGCCAGACGCCGGGCGTCATCGACCTTGACCCGCAGGCTGCGCCGGGTGGCTTCAAGCTGGATAGCCTGCAGATCACGGATGAAATACCTGTGAAGTGGCACCTGCAGCGGCACGAAATCGAGTGTCAAACTCTCCGTAGACAACGCCGCCCGCT > NC_002947/5247716‑5248008 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |