Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,389,315 | T→A | 16.1% | L926Q (CTG→CAG) | dld2 → | D‑lactate dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,389,315 | 0 | T | A | 16.1% | 69.6 / 8.8 | 31 | L926Q (CTG→CAG) | dld2 | D‑lactate dehydrogenase |
Reads supporting (aligned to +/- strand): ref base T (15/11); new base A (2/3); total (17/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.36e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.23e-01 |
TTTACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGG > NC_002947/5389170‑5389461 | tttACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTa < 2:462960/150‑1 (MQ=255) accCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACcgc < 1:526420/150‑1 (MQ=255) ccccGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCAGGTAGAccaggc < 2:595088/150‑5 (MQ=255) ccACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCATAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTGGACCGCGTCACCCGGCCACGCat > 1:380165/1‑149 (MQ=255) cACTCGTTGCGCAGCCTGAAGGTCGCCGTGCAGTATTGCAGCGAAGTTAGTGCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGCTATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGc < 1:78252/150‑1 (MQ=255) cACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCAGGTAGAccagg < 1:258087/133‑4 (MQ=255) cACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCAGGTAGAccagg > 2:258087/1‑130 (MQ=255) cACTCGTTGCGCAGCCTCAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACAACGGCATGGTCTACCTGTGAGACCGCGTCACGCGGCCACGCAGc > 2:314796/1‑150 (MQ=255) cTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCct > 1:197146/1‑150 (MQ=255) gcAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTgg < 2:97008/114‑1 (MQ=255) gcAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTgg > 1:97008/1‑114 (MQ=255) gACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCAGGTAGAcca < 2:597762/110‑2 (MQ=255) gACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCAGGTAGAcca > 1:597762/1‑109 (MQ=255) aCGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACCCAGCCTCTAACGCGTTGATATAGGTg > 2:98538/1‑150 (MQ=255) gCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTggg < 2:125571/150‑1 (MQ=255) ccGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTgggg > 2:536475/1‑150 (MQ=255) cAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGt > 1:371990/1‑131 (MQ=255) cAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGt < 2:371990/131‑1 (MQ=255) tttCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTAc > 1:397435/1‑150 (MQ=255) aGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGc > 2:383234/1‑150 (MQ=255) cGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTc < 1:124988/150‑1 (MQ=255) gACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCa > 1:385789/1‑150 (MQ=255) cACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGccacc > 1:10300/1‑150 (MQ=255) cACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGccacc > 1:316943/1‑150 (MQ=255) aCGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGccacca < 2:10300/150‑1 (MQ=255) ccTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGc > 2:532848/1‑150 (MQ=255) tCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTcg > 1:582340/1‑150 (MQ=255) tACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTcgcg < 1:430126/150‑1 (MQ=255) tACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTcgcg < 1:98538/150‑1 (MQ=255) aCCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCgg > 1:449850/1‑150 (MQ=255) aCCTGGTAAACCGCGTCACCCGGCCGCGCAGCCTCTAACGCATTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCgg < 2:397435/150‑1 (MQ=255) | TTTACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGG > NC_002947/5389170‑5389461 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |