Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,610,450 | G→A | 100% | S39L (TCG→TTG) | PP_4929 ← | LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,610,450 | 0 | G | A | 100.0% | 84.7 / NA | 26 | S39L (TCG→TTG) | PP_4929 | LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (9/17); total (9/17) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCGACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTAC > NC_002947/5610315‑5610586 | tGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTtgtgt < 1:63927/150‑2 (MQ=255) ctccAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGaa > 1:196314/1‑150 (MQ=255) tccAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGTTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAAc > 1:298991/1‑150 (MQ=255) aTTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAAc > 2:183548/1‑122 (MQ=255) aTTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAAc < 1:183548/122‑1 (MQ=255) ttGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAg > 2:615499/1‑142 (MQ=255) ttGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAg < 1:615499/142‑1 (MQ=255) gccggccgCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAAtt < 1:577298/150‑1 (MQ=255) cgCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCaa < 2:73047/150‑1 (MQ=255) cgCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCaa < 1:400211/150‑1 (MQ=255) cgCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCaa < 1:422339/150‑1 (MQ=255) tgctgcGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGt > 1:595859/1‑150 (MQ=255) tCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTccctggc < 2:238275/150‑6 (MQ=255) aCCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTCCCACTGCTCGGCCATCAAc < 1:417819/150‑1 (MQ=255) ggTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTAtctc > 2:198710/1‑150 (MQ=255) cGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCa < 1:456427/150‑1 (MQ=255) cGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCa < 2:407872/150‑1 (MQ=255) tttCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAAtt > 2:261457/1‑108 (MQ=255) tttCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTcc < 1:356416/145‑1 (MQ=255) tttCGAGCAGCGCGATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTcc > 2:356416/1‑145 (MQ=255) tttCGAGCAGCGCGATGGCACTGCTGATCCCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAAtt < 1:261457/108‑1 (MQ=255) gcgATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAAt < 2:196314/150‑1 (MQ=255) gATGGCACTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGa < 1:7418/150‑1 (MQ=255) aCTGCTGATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCACCCTATCTCCCATATCGATAGGTAATGACTTTAc < 2:595859/150‑1 (MQ=255) tgATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGa < 2:218247/139‑1 (MQ=255) tgATCGCCAACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGa > 1:218247/1‑139 (MQ=255) | TGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCGACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTAC > NC_002947/5610315‑5610586 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |