Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,015,921 | T→A | 31.1% | T274S (ACG→TCG) | PP_5728 ← | rhs repeat‑associated core domain‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,015,921 | 0 | T | A | 31.1% | 18.0 / 7.0 | 16 | T274S (ACG→TCG) | PP_5728 | rhs repeat‑associated core domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base T (5/6); new base A (2/3); total (7/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
ACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTGGTCAACCCCACCTTACTTTAAGCGTCTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTATTATCGATCGCTATCGCATTTTTATGAACATACCAATAGTCCTTACCGCGAACCCAGGACTCAGACTCATGCACGTAAAACCCTACTA > NC_002947/6015792‑6016070 | aCAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTGGTCAACCCCACCTTACTTTAAGCGTCTTACTAATTAAAAATGGaa < 2:371120/150‑1 (MQ=255) agagGTGAATAGAACCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGATCAAGCGGGTTGGTTGCCTAGGGCAAACTTTGTTCAACCCCACCTTACTTTAAGTGAAAAAAAAAAAAAAAATGGAAATACCACTTCTTCGCTcac < 2:561643/150‑1 (MQ=255) ctGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTGGTCAACCCCACCTTACTTTAAGCGTCTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATAcgc > 1:9822/1‑150 (MQ=255) gTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTGGTCAACCCCACCTTACTTTAAGCGTCTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTATTATCGATCGc < 2:9822/150‑1 (MQ=255) ggggTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTGGTCAACCCCACCTTACTTTAAGCGACTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTGTTATCGATCGCTATCg > 1:259284/1‑150 (MQ=255) ggggTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTGGTCAACCCCACCTTACTTTAAGCGACTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTATTATCGATCGCTATCg > 1:259287/1‑150 (MQ=255) gTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTGGTCAACCCCACCTTACTTTAAGCGTCTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTATTATCGATCGCTATCGCAt > 2:296480/1‑150 (MQ=255) gAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTGGTCAACCCCACCTTACTTTAAGCGTCTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTATTATCGATCGCTATCGCATTTTTATGaa < 1:296480/150‑1 (MQ=255) ccTAGGGCAAACTCTGGTCAACCCCACCTTACTTTAAGCGTCTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTATTATCGATCGCTATCGCATTTTTATGAACATACCAATAGTCCTTACcg > 1:446373/1‑150 (MQ=255) tAGGGCAAACTCTGGTCAACCCCACCTTACTTTAAGCGTCTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTATTATCGATCGCTATCGCATTTTTATGAACATACCAATAGTCCTTACcgcg > 1:477966/1‑150 (MQ=255) ggTCAACCCCACCTTACTTTAAGCGACTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTGTTATCGATCGCTATCGCATTTTTATGAACATACCAATAGTCCTTACCGCGAACCCAGgactca < 2:259284/150‑1 (MQ=255) ggTCAACCCCACCTTACTTTAAGCGACTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTATTATCGATCGCTATCGCATTTTTATGAACATACCAATAGTCCTTACCGCGAACCCAGgactca < 2:259287/150‑1 (MQ=255) ccccACCTTACTTTAAGCGTCTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTATTATCGATCGCTATCGCATTTTTATGAACATACCAATAGTCCTTACCGCGAACCCAGgactcagactca < 2:137681/150‑1 (MQ=255) tAAGCGTCTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTATTATCGATCGCTATCGCATTTTTATGAACATACCAATAGTCCTTACCGCGAACCCAGGACTCAGACTCATGCACGTAAAAcc < 2:477966/150‑1 (MQ=255) gTCTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTATTATCGATCGCTATCGCATTTTTATGaa > 2:401413/1‑91 (MQ=255) gTCTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTATTATCGATCGCTATCGCATTTTTATGaa < 1:401413/91‑1 (MQ=255) tCTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTATTATCGATCGCTATCGCATTTTTATGAACATACCAATAGTCCTTACCGCGAACCCAGGACTCAGACTCATGCACGTAAAACCctacta < 2:446373/150‑1 (MQ=255) | ACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTGGTCAACCCCACCTTACTTTAAGCGTCTTACTAATTAAAAATGGAAATACCACTTCTTCGCTCACATGAACCTTGTGATACGCGCTATTATCGATCGCTATCGCATTTTTATGAACATACCAATAGTCCTTACCGCGAACCCAGGACTCAGACTCATGCACGTAAAACCCTACTA > NC_002947/6015792‑6016070 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |