| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 72619 | 16 (0.690) | 6 (0.270) | 6/242 | NT | 26.5% | coding (230/948 nt) | glyQ | glycine‑tRNA ligase subunit alpha |
| ? | NC_002947 | = 72634 | 18 (0.810) | coding (215/948 nt) | glyQ | glycine‑tRNA ligase subunit alpha | |||||
GAGGGTCGGCGATTCCCAGTTGTCTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/72465‑72619‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggtATGGCGAAAACCCCA‑ACCGCCTGCAGCACTACTACCAGTTCCAGGTGGTGCTCAAACCGAACCCGGCCAACTTCCAGGAGCTGTACCTCGGCTCGCTGAAAGCCATCGGCCTGGATC < NC_002947/72634‑72518 GAGGGTCGGCGATTCCCAGTTGTCTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAG > 1:240453/1‑150 GGTCGGCGATTCCCAGTTGTCTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCG > 2:569443/1‑150 TCGGCGATTCCCAGTTGTCTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT > 1:18832/1‑150 GTCTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGTATGGCGAAAACCCCA‑A < 1:546905/150‑1 CTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGTATGGCGAAAACCCCA‑ACC < 1:310105/150‑1 GAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGATACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGTATGGCGAAAACCCCA‑ACCGCCTGCAGCACT > 1:165361/1‑150 TTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGTATGGCGAAAACCCCA‑ACCGCCTGC < 1:128286/109‑1 TTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGTATGGCGAAAACCCCA‑ACCGCCTGC > 2:128286/1‑109 CCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCTGCAGCACTACTACCAGTTCCAGGTGGTGCTCAAACCGAACCCGGCCAACTTCCAGGAGCTGTACCTCGGCTCGCTGAAAGCCATCGGCCTGGATC > 2:165361/1‑150 GAGGGTCGGCGATTCCCAGTTGTCTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/72465‑72619‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggtATGGCGAAAACCCCA‑ACCGCCTGCAGCACTACTACCAGTTCCAGGTGGTGCTCAAACCGAACCCGGCCAACTTCCAGGAGCTGTACCTCGGCTCGCTGAAAGCCATCGGCCTGGATC < NC_002947/72634‑72518 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |