New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1842441	18 (0.770)	4 (0.180)	4/240	NT	18.6%	coding (2395/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 1842465	18 (0.820)					coding (2371/2754 nt)	gacS	sensor protein GacS

GCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1842385‑1842441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgAGCCTGGGCACACCGCAGCAGGCGCAGGCCGAGCTGCTGAC  <  NC_002947/1842465‑1842425                                                                                                    GCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGAGCCTGGGCACACCGCAGCAGGCGCAGGCCGA           <  1:519532/89‑1 GCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGAGCCTGGGCACACCGCAGCAGGCGCAGGCCGA           >  2:519532/1‑89                  GTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGAGCCTGGGCACACCGCAGCAGGCGCAGGCCGAGCTGCTGAC  <  1:355231/81‑1                  GTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCGGAGCCTGGGCACACCGCAGCAGGCGCAGGCCGAGCTGCTGAC  >  2:355231/1‑81                                                                                                    GCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1842385‑1842441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgAGCCTGGGCACACCGCAGCAGGCGCAGGCCGAGCTGCTGAC  <  NC_002947/1842465‑1842425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.