New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3588138	17 (0.730)	5 (0.220)	5/244	NT	22.1%	intergenic (+16/‑59)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
	?	NC_002947	= 3588208	19 (0.850)					coding (12/1272 nt)	benE‑II	benzoate transport protein

GGTCGGGGAGGTGGTGTTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3587987‑3588138 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgCTTCGCGGGCATGCCCGCTCCAACAACGACTGCACAGGCTTCACCTGTGGGAGCGGGCATGCCCGCGAAACAG  <  NC_002947/3588208‑3588136                                                                                                                                                                                                                                   GGTCGGGGAGGTGGTGTTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGC                                                                             <  2:63441/150‑1  GTCGGGGAGGTGGTGTTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCT                                                                            >  1:454523/1‑150                                                          CGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCAATGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGCTTCGCGGGCATGCCCGCTCCAACAACGACTGCACAGGCTTCACCTGTGGGAGCG                    <  1:373662/150‑1                                                              TTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCAACAACGACTGCACAGGCTTCACCTGTGGGAGCGGGCA                <  2:454523/150‑1                                                                            GGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGCTTCGCGGGCATGCCCGCTCCAACAACGACTGCACAGGCTTCACCTGTGGGAGCGGGCATGCCCGCGAAACAG  <  1:139303/150‑1                                                                                                                         TTTGCAGGAGGCCTGATCCACCGAGTGGGCTGCTTCGCGGGCATGCCCGCTCCAACAACGACTGCACAGGCTTCACCTGTGGGAGCGG                   <  1:18615/88‑1                                                                                                                         TTTGCAGGAGGCCTGATCCACCGAGTGGGCTGCTTCGCGGGCATGCCCGCTCCAACAACGACTGCACAGGCTTCACCTGTGGGAGCGG                   >  2:18615/1‑88                                                                                                                                                                                                                                   GGTCGGGGAGGTGGTGTTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3587987‑3588138 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgCTTCGCGGGCATGCCCGCTCCAACAACGACTGCACAGGCTTCACCTGTGGGAGCGGGCATGCCCGCGAAACAG  <  NC_002947/3588208‑3588136

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.