New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4163289	26 (1.120)	4 (0.180)	4/240	NT	14.1%	coding (217/1329 nt)	pssA	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
	?	NC_002947	= 4163304	24 (1.090)					coding (202/1329 nt)	pssA	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase

TCGCGGGTCTGCACTGGCACGCCATGAATCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4163135‑4163289 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggccAAGGCCGAGCGGCCAGGCCTGGAGATCACCATCGTGGTCGACTGGTTCCGCGCCAGGCGCGGGCTGCTGGGGGCCGGGCGTCAGCCGGGCAATGCCGCCTGGTATCAGGCCCAGCGCCAGTTGCGCGGGCTGGACATCGCGATTCATGG  <  NC_002947/4163304‑4163156                                                                                                                                                                                                                                                                                                                  TCGCGGGTCTGCACTGGCACGCCATGAATCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCC                                                                                                                                                            >  1:310711/1‑150                                                                   TACCAGGCGGAATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCAAGGCCGAGCGGCCAGGCCTGGAG                                                                                                                               <  1:562248/113‑1                                                                   TACCAGGCGGAATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCAAGGCCGAGCGGCCAGGCCTGGAG                                                                                                                               >  2:562248/1‑113                                                                             CATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCAAGGCCGAGCGGCCAGGCCTG                                                                                                                                  >  1:302900/1‑100                                                                             CATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCAAGGCCGAGCGGCCAGGCCTG                                                                                                                                  <  2:302900/100‑1                                                                                                                                                      CAGGCCAAGGCCGAGCGGCCAGGCCTGGAGATCACCATCGTGGTCGACTGGTTCCGCGCCAGGCGCGGGCTGCTGGGGGCCGGGCGTCAGCCGGGCAATGCCGCCTGGTATCAGGCCCAGCGCCAGTTGCGCGGGCTGGACATCGCCATT       >  2:69513/1‑150                                                                                                                                                       AGGCCAAGGCCGAGCGGCCAGGCCTGGAGATCACCATCGTGGTCGACTGGTTCCGCGCCAGGCGCGGGCTGCTGGGGGCCGGGCGTCAGCCGGGCAATGCCGCCTGGTATCAGGCCCAGCGCCAGTT                             >  1:192466/1‑127                                                                                                                                                       AGGCCAAGGCCGAGCGGCCAGGCCTGGAGATCACCATCGTGGTCGACTGGTTCCGCGCCAGGCGCGGGCTGCTGGGGGCCGGGCGTCAGCCGGGCAATGCCGCCTGGTATCAGGCCCAGCGCCAGTT                             <  2:192466/127‑1                                                                                                                                                         GCCAAGGCCGAGCGGCCAGGCCTGGAGATCACCATCGTGGTCGACTGGTTCCGCGCCAGGCGCGGGCTGCTGGGGGCCGGGCGTCAGCCGGGCAATGCCGCCTGGTATCAGGCCCAGCGCCAGTTGCGCGGGCTGGACATCGCGATTCAT    <  2:281280/150‑1                                                                                                                                                           CAAGGCCGAGCGGCCAGGCCTGGAGATCACCATCGTGGTCGACTGGTTCCGCGCCAGGCGCGGGCTGCTGGGGGCCGGGCGTCAGCCGGGCAATGCCGCCTGGTATCAGGCCCAGCGCCAGTTGCGCGGGCTGGACATCGCGATTCATGG  >  1:320793/1‑150                                                                                                                                                                                                                                                                                                                  TCGCGGGTCTGCACTGGCACGCCATGAATCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4163135‑4163289 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggccAAGGCCGAGCGGCCAGGCCTGGAGATCACCATCGTGGTCGACTGGTTCCGCGCCAGGCGCGGGCTGCTGGGGGCCGGGCGTCAGCCGGGCAATGCCGCCTGGTATCAGGCCCAGCGCCAGTTGCGCGGGCTGGACATCGCGATTCATGG  <  NC_002947/4163304‑4163156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.