New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4477202	15 (0.640)	4 (0.180)	4/244	NT	23.9%	coding (834/1119 nt)	PP_3968	sensor histidine kinase
	?	NC_002947	= 4477239	11 (0.490)					coding (797/1119 nt)	PP_3968	sensor histidine kinase

TGCCGCGTAGCTTGAATATCTGCCCTCTGGCTTGAACAGATAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4477052‑4477202 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggCTCAGGTCTTCTCCAATTTGATTGGCAATGCCCTGCTCCATGGTGAC  <  NC_002947/4477239‑4477193                                                                                                                                                                                                        TGCCTCGTAGCTTGAATATCTGCCCTCTGGCTTGAACAGATAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGTTATTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATG                                                  <  2:238902/150‑1                                        ATAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGCTCAGGTCTTCTCCAATTTGATTGGCAATGCCCTGCTC           >  2:10192/1‑150                                         TAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGCTCAGGTCTTCTCCAATTTGATTGGCAATGCCCTGCTCC          >  1:610430/1‑150                                             GCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGCTCAGGTCTTCTCCAATTTGATTGGCAATGCCCTGCTCCATGG      <  1:10192/150‑1                                                 CACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGCTCAGGTCTTCTCCAATTTGATTGGCAATGCCCTGCTCCATGGTGAC  <  2:610430/150‑1                                                                                                                                                                                                        TGCCGCGTAGCTTGAATATCTGCCCTCTGGCTTGAACAGATAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4477052‑4477202 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggCTCAGGTCTTCTCCAATTTGATTGGCAATGCCCTGCTCCATGGTGAC  <  NC_002947/4477239‑4477193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.