New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5165972 =	20 (0.860)	3 (0.140)	3/240	NT	14.0%	coding (1956/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	5166024 =	18 (0.820)					coding (1904/3906 nt)	hrpA	ATP‑dependent helicase HrpA

GCTGATTTGCCGTGACCTGCAGCTGACGGTGAACAAGGAACCGACCGATTACCAGAAGCTGCACAAGGCAATCCTCAGCGGGCTGCTCAGCCAGATTGGCCAGAAGACCGAAGAGGGCGACTACCAGGGCGCCCGTCAGCGGCGCTTCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5166122‑5165972 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttctggCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAATCGGTCGGTTCCTTGTTCACCGTCAGCTGCAGGTCACGGCAAATCAG  >  NC_002947/5166024‑5166121                                                                                                                                                                                                                                                           GCTGATTTGCCGTGACCTGCAGCTGACGGTGAACAAGGAACCGACCGATTACCAGAAGCTGCACAAGGCAATCCTCAGCGGGCTGCTCAGCCAGATTGGCCAGAAGACCGAAGAGGGCGACTACCAGGGCGCCCGTCAGCGGCGCTTCTG                                                                                                     >  1:58058/1‑150  CTGATTTGCCGTGACCTGCAGCTGACGGTGAACAAGGAACCGACCGATTACCAGAAGCTGCACAAGGCAATCCTCAGCGGGCTGCTCAGCCAGATTGGCCATATGTGGGAAGAGGGCGACTACCAGGGCGCCCGTCAGCGGCGCTTCTGG                                                                                                    <  1:413269/150‑1  CTGATTTGCCGTGACCTGCAGCTGACGGTGAACAAGGAACCGACCGATTACCAGAAGCTGCACAAGGCAATCCTCAGCGGGCTGCTCAGCCAGATTGGCCAGAAGACCGAAGAGGGCGACTACCAGGGCGCCCGTCAGCGGCGCTTCTGG                                                                                                    <  1:360098/150‑1                                                                                         AGCCAGATTGGCCAGAAGACCGAAGAGGGCGACTACCAGGGCGCCCGTCAGCGGCGCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAATCGGTCGGTTCCTTGTTCACCGTCAGCTGCAGGTCA             >  2:62089/1‑150                                                                                           CCAGATTGGCCAGAAGACCGAAGAGGGCGACTACCAGGGCGCCCGTCAGCGGCGCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAATCGGTCGGTTCCTTGTTCACCGTCAGCTGCCGGTCACG           >  2:37/1‑150                                                                                                    CCAGAAGACCGAAGAGGGCGACTACCAGGGCGCCCGTCAGCGGCGCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAATCGGTCGGTTCCTTGTTCACCGTCAGCTGCAGGTCACGGCAAATCAG  >  2:329515/1‑150                                                                                                                                                                                                                                                           GCTGATTTGCCGTGACCTGCAGCTGACGGTGAACAAGGAACCGACCGATTACCAGAAGCTGCACAAGGCAATCCTCAGCGGGCTGCTCAGCCAGATTGGCCAGAAGACCGAAGAGGGCGACTACCAGGGCGCCCGTCAGCGGCGCTTCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5166122‑5165972 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttctggCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAATCGGTCGGTTCCTTGTTCACCGTCAGCTGCAGGTCACGGCAAATCAG  >  NC_002947/5166024‑5166121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.