New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	617041 =	13 (0.560)	4 (0.180)	3/246	NT	21.9%	coding (366/981 nt)	PP_0531	hypothetical protein
	?	NC_002947	617114 =	16 (0.710)					coding (439/981 nt)	PP_0531	hypothetical protein

CATTTTCGTGAACTGCACCCTCATTATCGGGCGATGGAAGACAAAGGCGTGCTGCATGTCTATGAGCATACCGAGCCGTTCATCTGGCGCCTGGGGGCAATGATTTGCACGTATGCGATGGAAAACAAATACAACATCATCATGGAGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTCCATCTGATTGCGTGTCAGAAAGAATTCAGCCACTGGTCGACCCTGGACCGTGTGGTCAACAGTGTT  >  NC_002947/616895‑617179                                                                                                                                                   |                                                                                                                                           gcatcgatgatggacctgccattgatttgcgcctcttcgatctgcgtcaggctgaccacacgctcgagctcatgattgccaacactgttgaccacacggtccagggtcgaccagtggctgaattctttctgacacgcaatcagatgGAcc                                                                                                                                         <  2:253325‑M1/4‑1 (MQ=255)                                    ttcgatctgcgtcaggctgaccacacgctcgagctcatgattgccaacactgttgaccacacggtccagggtcgaccagtggctgaattctttctgacacgcaatcagatgGa                                                                                                                                           >  2:259815‑M1/112‑113 (MQ=255)                                    ttcgatctgcgtcaggctgaccacacgctcgagctcatgattgccaacactgttgaccacacggtccagggtcgaccagtggctgaattctttctgacacgcaatcagatgGa                                                                                                                                           <  1:259815‑M1/2‑1 (MQ=255)                                      gaGACAAAGGCGTGCTGCATGTCTATGAGCCTACCGAGCCGTTCATCTGGCGCCTGGGGGCAATGATTTGCACGTATGCGATGGAAAACAAATACAACATCATCATGGAGAGCTCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTg                                                                                                    >  2:185699/2‑150 (MQ=255)                                                             tATGAGCATACCGAGCCGTTCATCTGGCGCCTGGGGGCAATGATTTGCACGTATGCGATGGAAAACAAATACAACATCATCATGGAGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTAATGCCGCCCTGAAGGGCTATCag                                                                             >  2:234540/1‑150 (MQ=255)                                                                      tcctgattgcgtacacggttcaccccacggtccaaggtcgacaagtggctgaattctttctgacccgcgatcagatgGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTc                                                                    >  2:116996‑M1/78‑150 (MQ=255)                                                                      taatgattgccaacactgttgaccacacggtccagggtcgaccagtggctgaattctttctgacacgcaatcagatgGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTc                                                                    <  1:116996‑M1/73‑1 (MQ=255)                                                                                     gggCGCCTGGGGGCAATGATTTGCACGTATGCGATGGAAAACAAATACAACATCATCATGGAGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTCCATCTGATTGCgtgt                                                     <  2:88665/149‑1 (MQ=255)                                                                                           cTGGGGGCAATGATTTGCACGTATGCGATGGAAAACAAATACAACATCATCATGGAGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTCCATCTGATTGCGTGTCagaaa                                               >  2:492316/1‑150 (MQ=255)                                                                                                 gCAATGATTTGCACGTATGCGATGGAAAACAAATACAACATCATCATGGAGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCCGAGCGAGGTCCATCTGATTGCGTGTCAGAAAGAATTc                                         <  1:492316/150‑1 (MQ=255)                                                                                                   aaTGATTTGCACGTATGCGATGGAAAACAAATACAACATCATCATGGAGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTCCATCTGATTGCGTGTCAGAAAGAATTCAg                                       >  1:576462/1‑150 (MQ=255)                                                                                                                 agtggctgaattctttctgacacgcaatcagatgGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTCCa                                                                  >  1:479924‑M1/35‑109 (MQ=255)                                                                                                                 agtggctgaattctttctgacacgcaatcagatgGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTCCa                                                                  <  2:479924‑M1/75‑1 (MQ=255)                                                                                                                    cGATGGAAAACAAATACAACATCATCATGGAGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTCCATCTGATTGCGTGTCAGAAAGAATTCAGCCACTGGTCGACCCTgg                      >  2:452153/1‑150 (MQ=255)                                                                                                                       tGGAAAACAAATACAACATCATCATGGAGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTCCATCTGATTGCGTGTCAGAAAGAATTCAGCCACTGGTCGACCCTGGAcc                   >  1:507563/1‑150 (MQ=255)                                                                                                                          aaaaCAAATACAACATCATCATGGAGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTCCATCTGATTGCGTGTCAGAAAGAATTCAGCCACTGGTCGACCCTGGACCgtg                <  1:452153/150‑1 (MQ=255)                                                                                                                           aaaCAAATACAACATCATCATGGAGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTCCATCTGATTGCGTGTCAGAAAGAATTCAGCCACTGGTCGACCCTGGACCgtgt               <  1:509493/150‑1 (MQ=255)                                                                                                                              cAAATACAACATCATCATGGAGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTCCATCTGATTGCGTGTCAGAAAGAATTCAGCCACTGGTCGACCCTGGACCGTGTGGt            <  1:234540/150‑1 (MQ=255)                                                                                                                                        atcatcatGGAGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTCCATCTGATTGCGTGTCAGAAAGAATTCAGCCACTGGTCGACCCTGGACCGTGTGGTCAACAGTGtt  >  1:253325/1‑150 (MQ=255)                                                                                                                                        atcatcatGGAGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTCCATCTGATTGCGTGTCAGAAAGAATTCAGCCACTGGTCGACCCTGGACCGTGTGGTCAACAGTGtt  <  2:576462/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                           CATTTTCGTGAACTGCACCCTCATTATCGGGCGATGGAAGACAAAGGCGTGCTGCATGTCTATGAGCATACCGAGCCGTTCATCTGGCGCCTGGGGGCAATGATTTGCACGTATGCGATGGAAAACAAATACAACATCATCATGGAGACCGCGCTCGACAGCCCTCATTTCGCTGATTTTCCACCTGATGCCGCCCTGAAGGGCTATCAGAGCGAGGTCCATCTGATTGCGTGTCAGAAAGAATTCAGCCACTGGTCGACCCTGGACCGTGTGGTCAACAGTGTT  >  NC_002947/616895‑617179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.