| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2676814 | 23 (0.990) | 5 (0.230) | 5/238 | NT | 19.0% | coding (92/315 nt) | PP_2346 | hypothetical protein |
| ? | NC_002947 | = 2676840 | 21 (0.960) | coding (118/315 nt) | PP_2346 | hypothetical protein | |||||
GTCGACATGGATGCCAAGACCGGTGAGGTGCTCAAGGACGAACGAGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCTGGAAGAAGACGATGATCGCTACGAATATGAAGTCGAGTTGCTG > NC_002947/2676670‑2676959 | gTCGACATGGATGCCAAGACCGGTGAGGTGCTCAAGGACGAACGAGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGccc > 1:589987/1‑150 (MQ=255) cGACATGGATGCCAAGACCGGTGAGGTGCTCAAGGACGAACGAGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCtt < 2:133822/150‑2 (MQ=255) gATGCCAAGACCGGTGAGGTGCTCAAGGACGAACGAGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTcc < 1:194797/150‑1 (MQ=255) ggTGCTCAAGGACGAGCGCGCTAGCTGATCATTGTTTAATCCTGGAGGGCACTTCACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCAtcatc > 2:5545‑M2/1‑145 (MQ=255) gaacgaGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCAtcatcctggtccaggtcg > 2:589987‑M2/1‑132 (MQ=255) gaacgaGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGc > 2:26962/1‑150 (MQ=255) acgaGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCaa > 2:229958/1‑150 (MQ=255) aGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAtgcccttctgacggagcttcagggcttcatcc < 2:523605‑M1/129‑33 (MQ=255) aGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAtgcccttctgacggagcttcagggcttcatcc > 1:523605‑M1/1‑97 (MQ=255) cTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGt > 1:451856/1‑111 (MQ=255) cTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGt < 2:451856/111‑1 (MQ=255) tgatgaTCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAGTTGCTCgagc < 1:232016/150‑2 (MQ=255) tATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGc < 1:26962/150‑1 (MQ=255) tATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGc < 2:357889/150‑1 (MQ=255) gCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCggg > 1:517747/1‑150 (MQ=255) gTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGgcgc > 2:47381/1‑150 (MQ=255) gcgcTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTctgctg < 2:563395/150‑1 (MQ=255) gcTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGAGCTGGACCAGGATGAAGGCCTGTAGCTACGTCATAAGGGTATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTCGGGCGTCATTCCGGGGCGCGTCTGCTGGa > 1:304553/1‑150 (MQ=255) ctctCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGaa < 1:173621/150‑1 (MQ=255) tcGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGaa > 1:398186/1‑147 (MQ=255) tcGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGaa < 2:398186/147‑1 (MQ=255) gctgctTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAGCCGa < 1:47381/150‑1 (MQ=255) gctTGCCGTCTGCTCCCTGGCTGTCGCCCGCCACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGACACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCt < 2:304553/150‑1 (MQ=255) ctTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAtgcccttctgacggagcttcagggcttcatc < 2:132779‑M1/78‑32 (MQ=255) ctTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAtgcccttctgacggagcttcagggcttcatc > 1:132779‑M1/1‑47 (MQ=255) cGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAg < 2:463993/137‑1 (MQ=255) cGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAg > 1:463993/1‑137 (MQ=255) gTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCTGgaagaa > 1:337781/1‑150 (MQ=255) ccGCGACCTGGACCAGTATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCTGGAAGAAGACGATGATCGCTACGAata > 2:53566/1‑150 (MQ=255) cgACCTGGACCAGGATGAtgcccttctgacggagcttcagggcttcatcctggtccaggtcgcgggcaacagccagggagcagacggcaagcagcgagagcgccaggtaacgtgccgtccgggatacatggatcatcagctgtctcgttc > 2:589987‑M1/1‑18 (MQ=255) ggATGAAGCCCTGCAGCTCCGTCAGAAGGGCATCATCCTGCCGCGCGAGCAACTGCTCGAGCCCGCCCTGGGGCGGCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCTGGAAGAAGACGATGATCGCTACGAATATGAAGTCGAGTTGCt < 1:226530/150‑1 (MQ=255) ggATGAAGCCCTGAAGCTCCGTCAGAAGGGCAtcatcctggtccaggtcgcgggcaacagccagggagcagacggcaagcagcgagagcgccaggtaacgtgccgtccgggatacatggatcatcagct > 1:523605‑M2/1‑32 (MQ=255) ggATGAAGCCCTGAAGCTCCGTCAGAAGGGCAtcatcctggtccaggtcgcgggcaacagccagggagcagacggcaagcagcgagagcgccaggtaacgtgccgtccgggatacatggatcatcagct < 2:523605‑M2/129‑98 (MQ=255) gatgatgcccttctgacggagcttcagggcttcatcctggtccaggtcgcgggcaacagccagggagcagacggcaagcagcgagagcgccaggtgaagtgccctccaggattaaacaatgatcagctagcgcgctcgtccttgagcacc > 2:5545‑M1/1‑5 (MQ=255) gATGAAGCCCTGAAGCTCCGTCAGAAGGGCAtcatcctggtccaggtcgcgggcaacagccagggagcagacggcaag < 2:132779‑M2/78‑48 (MQ=255) gATGAAGCCCTGAAGCTCCGTCAGAAGGGCAtcatcctggtccaggtcgcgggcaacagccagggagcagacggcaag > 1:132779‑M2/1‑31 (MQ=255) gATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGACGTCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCTGGAAGAAGACGATGATCGCTACGAATATGAAGTCGAGTTGCTg > 1:544823/1‑150 (MQ=255) | GTCGACATGGATGCCAAGACCGGTGAGGTGCTCAAGGACGAACGAGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCTGGAAGAAGACGATGATCGCTACGAATATGAAGTCGAGTTGCTG > NC_002947/2676670‑2676959 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |