New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5118306 =	30 (1.290)	4 (0.180)	4/240	NT	12.2%	coding (32/1341 nt)	PP_4505	sensor histidine kinase
	?	NC_002947	5118327 =	29 (1.320)					coding (53/1341 nt)	PP_4505	sensor histidine kinase

AAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAGCAGGAA  >  NC_002947/5118158‑5118451                                                                                                                                                     |                                                                                                                                                  aagtgctgggccgcctccaggccttcctgctcgtagtgcttggtccacttgctggccagggtattcaggcccgggtgacggctgaggatccaggcgtcctggttgagcatgtgccccagcaggatcgacaggcctgcgaccagggtgaTg                                                                                                                                                  >  2:13592‑M1/149‑150 (MQ=255)             aGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTctgg                                                                                                                                      <  2:571608/150‑1 (MQ=255)                        gCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCAc                                                                                                                           >  1:241308/1‑150 (MQ=255)                           tGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCt                                                                                                                        >  2:519844/1‑150 (MQ=255)                                  cTGAAAAAGGCGCCACGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCa                                                                                                                 <  2:426613/150‑1 (MQ=255)                                     aaaaaGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAAGTGCACTTGCGTTCACTGTTCTGGCGCATCTTGGCCAGTTTCTGGCTGGCCATCACACTGGTCGCAGGc                                                                                                              >  1:130294/1‑150 (MQ=255)                                         aGGCGCCAAGGCCCAGTACGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGt                                                                                                          <  1:448331/150‑1 (MQ=255)                                                     ccAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTTCTCTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTgg                                                                                              <  1:10882/150‑1 (MQ=255)                                                      cAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTggg                                                                                             <  2:415385/150‑1 (MQ=255)                                                              tGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGc                                                                                     <  1:237201/150‑1 (MQ=255)                                                                   gCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAAc                                                                                <  1:519844/150‑1 (MQ=255)                                                                              ggcccgCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTg                                                                     >  2:499319/1‑150 (MQ=255)                                                                                 ccgCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAAc                                                                                >  1:448050/1‑136 (MQ=255)                                                                                 ccgCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAAc                                                                                <  2:448050/136‑1 (MQ=255)                                                                                   gCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGc                                                                                                              >  1:305657/1‑104 (MQ=255)                                                                                   gCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGc                                                                                                              <  2:305657/104‑1 (MQ=255)                                                                                      tCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCa                                                             <  2:278924/150‑1 (MQ=255)                                                                                              ggccgggcTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTAAACCATGACGCCTGGATCCTCAGCCGTCAc                                                     <  1:14036/150‑1 (MQ=255)                                                                                               gccgggcTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTc                                                                                                         >  2:365127/1‑97 (MQ=255)                                                                                               gccgggcTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTc                                                                                                         <  1:365127/97‑1 (MQ=255)                                                                                                ccgggcTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCACCCAGGACGCCTGGATCCTCAGCCGTCAccc                                                   >  2:296442/1‑150 (MQ=255)                                                                                                            cGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATcc                                                                <  2:509943/125‑1 (MQ=255)                                                                                                            cGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATcc                                                                >  1:509943/1‑125 (MQ=255)                                                                                                             gTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATc                                                                 <  1:319749/123‑1 (MQ=255)                                                                                                             gTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATc                                                                 >  2:319749/1‑123 (MQ=255)                                                                                                             atgtgccccagcaggatcgacaggcctgcgaccagggtgaTGGCCAGTTTCTGGCTGGCCATc                                                                                                                             <  2:47596‑M1/23‑1 (MQ=255)                                                                                                             atgtgccccagcaggatcgacaggcctgcgaccagggtgaTGGCCAGTTTCTGGCTGGCCATc                                                                                                                             >  1:47596‑M1/41‑63 (MQ=255)                                                                                                              tttAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAg                                                            <  2:92321/127‑1 (MQ=255)                                                                                                              tttAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAg                                                            >  1:92321/1‑127 (MQ=255)                                                                                                                     cagcaggatcgacaggcctgcgaccagggtgaTGGCCAGTTTctggctgg                                                                                                                                  >  2:392635‑M1/33‑50 (MQ=255)                                                                                                                     cagcaggatcgacaggcctgcgaccagggtgaTGGCCAGTTTctggctgg                                                                                                                                  <  1:392635‑M1/18‑1 (MQ=255)                                                                                                                           cgggCGTTCACTGTTCTGGCGCATCCTGACCAGTTTCTGGATGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGCAACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCACGTg                        <  2:130294/147‑1 (MQ=255)                                                                                                                                 ttCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTgg                                                                                                                      >  2:267525/1‑50 (MQ=255)                                                                                                                                 ttCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTgg                                                                                                                      <  1:267525/50‑1 (MQ=255)                                                                                                                                   cACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGc                >  1:489863/1‑150 (MQ=255)                                                                                                                                                 aTCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAGCAGGaa  <  1:499319/150‑1 (MQ=255)                                                                                                                                                     TGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAg        >  1:574030‑M1/1‑140 (MQ=255)                                                                                                                                                     TGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAg        <  2:574030‑M1/140‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  AAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAGCAGGAA  >  NC_002947/5118158‑5118451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.