New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5903842	26 (1.120)	4 (0.200)	3/222	NT	13.0%	intergenic (+42/+65)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	= 5903870	31 (1.520)					intergenic (+70/+37)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease

GAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGC  >  NC_002947/5903693‑5903988                                                                                                                                                      |                                                                                                                                                   gAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG                                                                                                                                                    <  1:537209‑M1/150‑1 (MQ=255)   agagTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCt                                                                                                                                                  >  1:486457/1‑150 (MQ=255)           tgGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACaa                                                                                                                                          >  2:150547/1‑150 (MQ=255)             gTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAAcc                                                                                                                                        >  1:542836/1‑150 (MQ=255)                  tGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGaa                                                                                                                                   <  1:498911/150‑1 (MQ=255)                          ggTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGa                                                                                                                           <  1:335491/150‑1 (MQ=255)                                     gCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGacctcacagccttcagggttgtggtgagccctgtgg                                                                                                                <  2:354012‑M1/150‑37 (MQ=255)                                     gCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACGACAACCCTGAAGGCTGTGAGGTccctgtgg                                                                                                                <  2:509834‑M2/150‑9 (MQ=255)                                     gCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCACGCCCGCTCCCACAGGGacctcacagccttcagggttgtggtgagccctgtgg                                                                                                                <  2:518856‑M1/150‑37 (MQ=255)                                       cAATCCCTTGAGGGATGGCATGGTCACAAGCATTAGGGACTATCCACATTGGTATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTccctgtggga                                                                                                              <  2:466844‑M2/150‑11 (MQ=255)                                                 aGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGc                                                                                                    <  1:20207/150‑1 (MQ=255)                                                        gATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGaa                                                                                             >  2:346533/1‑150 (MQ=255)                                                         aTTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGaaa                                                                                            <  2:486457/150‑1 (MQ=255)                                                         aTTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGaaa                                                                                            <  1:25190/150‑1 (MQ=255)                                                             gTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGacctcacagccttcagggttgtggtgagccctgtg                                                                                                                 >  1:331494‑M1/1‑90 (MQ=255)                                                             gTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGacctcacagccttcagggttgtggtgagccctgtg                                                                                                                 <  2:331494‑M1/125‑36 (MQ=255)                                                             gTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGc                                                                                        >  2:366287/1‑150 (MQ=255)                                                             gTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGc                                                                                        >  1:177033/1‑150 (MQ=255)                                                                aGAAGTATCAGTGACTATCCACATTCGTATGCGGTATGGCTCTCAATCGGTCCTTTAGCCTTCTCCGACATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTTAGGTCCCTGTGGCAGCGGGCGTGCCCGCGAAAGGGCCAg                                                                                     <  2:297592/150‑1 (MQ=255)                                                                                   cacaTTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCa                                                                       <  1:114631/145‑1 (MQ=255)                                                                                   cacaTTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCa                                                                       >  2:114631/1‑145 (MQ=255)                                                                                       ttGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGcc                                                                             >  1:178480/1‑135 (MQ=255)                                                                                       ttGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGcc                                                                             <  2:178480/135‑1 (MQ=255)                                                                                                      gCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGAcc                                               >  2:291043/1‑150 (MQ=255)                                                                                                       cTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGt                                                                                   >  2:554641/1‑113 (MQ=255)                                                                                                       cTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGt                                                                                   <  1:554641/113‑1 (MQ=255)                                                                                                                ggTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCg                                     <  1:366287/150‑1 (MQ=255)                                                                                                                                 gggCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTgcagca                    <  1:150547/150‑1 (MQ=255)                                                                                                                                  ggCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTCGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCAc                   <  1:466844/150‑1 (MQ=255)                                                                                                                                       gCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCctct              >  1:520813/1‑150 (MQ=255)                                                                                                                                         ccGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTc            >  2:166706/1‑150 (MQ=255)                                                                                                                                         ccGCTCCCACAGGGCTCACCACAACCCGGAGGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTc            >  1:418399/1‑150 (MQ=255)                                                                                                                                            cTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGAt         <  2:542836/150‑1 (MQ=255)                                                                                                                                             tCCCACAGGGacctcacagccttcagggttgtggtgagccctgtgggagcgggcatgcccgcgaaggctccagcaccgattcaaagccataccgcataccaatgtggatagtccctaatgcttgtgaccatgccatccctcaagggattg        <  2:466844‑M1/150‑141 (MQ=255)                                                                                                                                               ccACAGGGacctcacagccttcagggttgtcgtgagccctgtgggagcgggcatgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctgatacttctgaccaatccagccctcaagggattggc      <  2:509834‑M1/150‑143 (MQ=255)                                                                                                                                               ccACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTccctgtgggagcgggcgtgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctgatacttctgaccaatccagccctcaagggattggc      <  2:518856‑M2/150‑115 (MQ=255)                                                                                                                                               ccACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTccctgtgggagcgggcatgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctgatacttctgaccaatccagccctcaagggattggc      <  2:354012‑M2/150‑115 (MQ=255)                                                                                                                                                cacaGGGCTCACCACAACCCTGAAGGCTGTGAGGTccctgtgggagcgggcatgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctgatacttctgac                              <  2:331494‑M2/125‑91 (MQ=255)                                                                                                                                                cacaGGGCTCACCACAACCCTGAAGGCTGTGAGGTccctgtgggagcgggcatgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctgatacttctgac                              >  1:331494‑M2/1‑35 (MQ=255)                                                                                                                                                cacaGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGcc     >  1:479307/1‑150 (MQ=255)                                                                                                                                                  caGGGCTCACCACCACCCTGAAGGCCATGAGGTCCCTGTGGGGGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCctg   <  1:346533/150‑1 (MQ=255)                                                                                                                                                  caGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCctg   >  1:341775/1‑150 (MQ=255)                                                                                                                                                   aGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCTTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCctgc  <  2:418399/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGC  >  NC_002947/5903693‑5903988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.