New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3863902	19 (0.820)	3 (0.130)	3/248	NT	12.4%	coding (2781/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 3863963	24 (1.050)					coding (2842/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator

GCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCGTCGCCGGAGCCTTTCCATAGTGGGTTCGACCTGGCCGAACTGCGTCACCTGACCCAGGACGACGAACAGTT  >  NC_002947/3863814‑3864102                                                                                                                                                      |                                                                                                                                            gcaTGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAAt                                                                                                                                             <  2:501215/150‑1 (MQ=255) gcaTGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAAt                                                                                                                                             <  1:340943/150‑1 (MQ=255)       cGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGt                                                                                                                                       <  1:289625/150‑1 (MQ=255)                         aaCTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTgc                                                                                                                     <  1:239141/150‑1 (MQ=255)                          aCTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTgcg                                                                                                                    >  1:119165/1‑150 (MQ=255)                                 cGGCGCATCCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTc                                                                                                             <  1:514614/150‑1 (MQ=255)                                       aTTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGAcc                                                                                                       >  1:154901/1‑150 (MQ=255)                                        ttCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGAccc                                                                                                      <  2:154901/150‑1 (MQ=255)                                         tCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCa                                                                                                     >  1:15216/1‑150 (MQ=255)                                                 tGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGcccc                                                                                             <  2:113916/150‑1 (MQ=255)                                                  ggAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCa                                                                                            <  1:130435/150‑1 (MQ=255)                                                          ggcgctcccTACCAGCAGGCCCTATTCTTGGCTTGACCGCGAATGCCCAGTCCGATGTGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGcc                                                                                    <  2:119165/143‑1 (MQ=255)                                                                   tGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCagcagc                                                                           <  1:287400/150‑1 (MQ=255)                                                                     ccAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGcc                                                                                                                                <  1:481543/95‑1 (MQ=255)                                                                     ccAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGcc                                                                                                                                >  2:481543/1‑95 (MQ=255)                                                                              cGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATgccaagaatacggcctgctggcaggccgcgctcgccctccaggctgcgaatgcgccgggtgagt                                                                             >  1:283979‑M2/1‑73 (MQ=255)                                                                              cGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATgccaagaatacggcctgctggcaggccgcgctcgccctccaggctgcgaatgcgccgggtgagt                                                                             <  2:283979‑M2/137‑65 (MQ=255)                                                                                tATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATgccaagaatacggcctgctggcaggccgcgctcgccctccaggctgcgaatgcgccgggtgagttcatgcccgtccatg                                                              <  1:406864‑M2/150‑80 (MQ=255)                                                                                        gCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGCCCCACCTGCCCCAGGTGCGCCCTCAGCAGCCGTCGCCGGAGCCTTTCCATa                                                      <  1:417137/150‑1 (MQ=255)                                                                                          gTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCGTCGCCGGAGCCTTTCCATAGt                                                    <  2:102453/150‑1 (MQ=255)                                                                                             aCCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCGTCGCCGGAGCCTTTCCATAGTggg                                                 >  2:230705/1‑150 (MQ=255)                                                                                              ccGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGCGCGCCCTCAGCAGCCGTCGCCGGAGCCTTTCCATAGTGGGt                                                >  1:66452/1‑150 (MQ=255)                                                                                                  cAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCGTCGCCGGAGCCTTTCCATAGTGGGTTCGa                                            >  1:270361/1‑150 (MQ=255)                                                                                                         cAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCCTCGCCGGAGCCTTTCCATAGTGGGTTCGACCTGGcc                                     >  1:159969/1‑150 (MQ=255)                                                                                                              cGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCAAGGTGCGCCCTCAGCAGCCGTCGCCGGAGCCTTTCCATAGTGGGTTCGACCTGGCCGAACt                                <  2:75409/150‑1 (MQ=255)                                                                                                                       tACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCGTCGCCGGAGCCTTTCCATAGTGGGTTCGACCTGGcc                                     <  1:274943/136‑1 (MQ=255)                                                                                                                       tACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCGTCGCCGGAGCCTTTCCATAGTGGGTTCGACCTGGcc                                     >  2:274943/1‑136 (MQ=255)                                                                                                                            gCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCGTCGCCGGAGCCTTTCCATAGTGGGTTCGACCTGGCCGAACTGCGTCACCTGAccc                  >  1:158231/1‑150 (MQ=255)                                                                                                                                ccTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCGCAGCAGCCGGCGCCGGAGCCTTTCCATAGTTGGGTCGACCTGGCCGAACTGCTTCACCTGACCAAGga              >  2:433990/1‑150 (MQ=255)                                                                                                                                            cATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCGTCGCCGGAGCCTTTCCATAGTGGGTTCGACCTGGCCGAACTGCGTCACCTGACCCAGGACGACGAACAGtt  <  1:93146/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                            GCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCGTCGCCGGAGCCTTTCCATAGTGGGTTCGACCTGGCCGAACTGCGTCACCTGACCCAGGACGACGAACAGTT  >  NC_002947/3863814‑3864102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.