New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4065632 =	27 (1.160)	3 (0.130)	3/246	NT	10.5%	coding (372/1491 nt)	PP_3582	RND transporter outer membrane protein
	?	NC_002947	4065689 =	25 (1.110)					coding (315/1491 nt)	PP_3582	RND transporter outer membrane protein

GCGTTGTAGGTGTTGCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCCACCAGGCGCCGCGGGCGATGGCGTCGGACGGCGAGGCCTGGGTCCAGCCTTCGG  >  NC_002947/4065540‑4065834                                                                                                                                                      |                                                                                                                                                  gggaaatctacggcgatgctgggctcaatgcgctggtcgaagagctcaaccgcagcaaccagaccgtggcgcaatcagaagcccagtatcgcCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCgcctgggcctgg                                                                                                                                                   >  2:415961‑M1/93‑150 (MQ=255)             ttGCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCt                                                                                                                                       >  1:148808/1‑150 (MQ=255)             ttGCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCt                                                                                                                                       >  1:553749/1‑150 (MQ=255)               gCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTc                                                                                                                                     >  2:400389/1‑150 (MQ=255)                cGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCt                                                                                                                                    <  1:400389/150‑1 (MQ=255)                cGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCt                                                                                                                                    <  1:418780/150‑1 (MQ=255)                                     gACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTtg                                                                                                               >  2:422082/1‑150 (MQ=255)                                       cAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGGtgct                                                                                                             >  2:3704/1‑150 (MQ=255)                                         ggCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTtgctgc                                                                                                           <  2:481376/150‑1 (MQ=255)                                           cTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCTCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGGTGCTGCgg                                                                                                         >  1:502488/1‑150 (MQ=255)                                                aCTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAg                                                                                                    >  2:490257/1‑150 (MQ=255)                                                         gCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGAc                                                                                           >  1:73629/1‑150 (MQ=255)                                                            ggTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAg                                                                                        <  2:247167/150‑1 (MQ=255)                                                             gTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAgc                                                                                       <  1:422082/150‑1 (MQ=255)                                                             gTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAgc                                                                                       <  2:219789/150‑1 (MQ=255)                                                                  cTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCAtt                                                                                  >  1:54284/1‑150 (MQ=255)                                                                                    gCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGAc                                                                                           <  2:20223/123‑1 (MQ=255)                                                                                    gCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGAc                                                                                           >  1:20223/1‑123 (MQ=255)                                                                                           cTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCGGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTcc                                                         >  1:235435/1‑150 (MQ=255)                                                                                            ccaggcccaggcgctggtgcgcagcagccgtgcggcgctgttccccagcctggacctgGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTccc                                                        >  2:415961‑M2/59‑150 (MQ=255)                                                                                                  ccaggcgctggtgcgcagcagccgtgcggcgctgttccccagcctggacctgGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAg                                                                               >  2:292719‑M2/53‑121 (MQ=255)                                                                                                  ccaggcgctggtgcgcagcagccgtgcggcgctgttccccagcctggacctgGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAg                                                                               <  1:292719‑M2/69‑1 (MQ=255)                                                                                                      gCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCCACCAGGcgcc                                              >  2:504862/1‑150 (MQ=255)                                                                                                        tGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGa                                                                                >  1:112973/1‑114 (MQ=255)                                                                                                        tGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGa                                                                                <  2:112973/114‑1 (MQ=255)                                                                                                                cgcggctcACGGCTTCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCCACCAGGCGCCGCGGGCGATg                                    >  2:483520/8‑150 (MQ=255)                                                                                                                                       cAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCCACCAGGCGCCGCGGGCGATGGCGTCGGACGGCGAGGCCTGGGt             >  1:160266/1‑150 (MQ=255)                                                                                                                                         gcgcCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCCACCAGGCGCCGCGGGCGATGGCGTCGGACGGCGAGGCCTGGGTcc           >  1:514517/1‑150 (MQ=255)                                                                                                                                          cgcgTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCCACCAGGCGCCGCGGGCGATGGCGTCGGACGGCGAGGCCTGGGTCCa          <  2:148808/150‑1 (MQ=255)                                                                                                                                               gggcctggCGATACTGGGCTTCTGATTGCGCCACGGTCGGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCCACCAGGCGCCGCGGGCGATGGCGTCGGACGGCGAGGCCTGGGTCCAGCCtt     <  2:235435/150‑1 (MQ=255)                                                                                                                                                ggcctggCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCCACCAGGCGCCGCGGGCGATGGCGTCGGACGGCGAGGCCTGGGTCCAGCCTTc    <  2:364128/150‑1 (MQ=255)                                                                                                                                                 gcctggCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCCACCAGGCGCCGCGGGCGATGGCGTCGGACGGCGAGGCCTGGGTCCAGCCTTCg   <  2:600986/150‑1 (MQ=255)                                                                                                                                                  cctgGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCCACCAGGCGCCGCGGGCGATGGCGTCGGACGGCGAGGCCTGGGTCCAGCCTTCgg  <  1:483520‑M2/146‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                  GCGTTGTAGGTGTTGCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGTCCAGGCTGGGGAACAGCGCCGCACGGCTGCTGCGCACCAGCGCCTGGGCCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCCACCAGGCGCCGCGGGCGATGGCGTCGGACGGCGAGGCCTGGGTCCAGCCTTCGG  >  NC_002947/4065540‑4065834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.