New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5246988	19 (0.820)	4 (0.190)	4/234	NT	17.6%	coding (1721/3303 nt)	PP_4623	hypothetical protein
	?	NC_002947	= 5247071	20 (0.930)					coding (1638/3303 nt)	PP_4623	hypothetical protein

GCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAGGGGCATAGAGCAGGTACTGATCGTCCTGCACCAGGCACAGCAGATCCTTCAAGGGCGTTTGCGCACCATTGAGGCAAACCAGACCGG  >  NC_002947/5246923‑5247213                                                                                                                                                     |                                                                                                                                               gcgcGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGa                                                                                                                                               >  1:472777‑M2/1‑149 (MQ=255)   gcgAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGagc                                                                                                                                             >  2:189104‑M2/1‑147 (MQ=255)   gcgAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGagc                                                                                                                                             >  1:196867‑M2/1‑147 (MQ=255)                  tgCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACACCGTTCAGTTACCGATTTCGAGAGCCATTTTTTCgagt                                                                                                                              <  1:576087/150‑1 (MQ=255)                    cATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCgagtga                                                                                                                            >  1:538774/1‑150 (MQ=255)                    cATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGAGCGGGATCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCgagtga                                                                                                                            <  1:591990/150‑1 (MQ=255)                     aTGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCgagtgag                                                                                                                           >  1:329627/1‑150 (MQ=255)                          ccAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGTGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGaa                                                                                                                      >  1:262199/1‑150 (MQ=255)                              tcagtGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGa                                                                                                                  >  1:434528/1‑150 (MQ=255)                              tcagtGGGTAGCAGCTCGACCTTACGCAAAAGGCGCTTGACACAACCATCCTGGGCCCGCGAGCATTGCCCCAGCAGGTCTGCCCTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCTCCATTTTTTCGAGTGACTCGAAAAGa                                                                                                                  >  2:70485/1‑150 (MQ=255)                                        gcagcTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGc                                                                                                        >  1:55974/1‑150 (MQ=255)                                                       gcAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGagcgccatttgcgcaaggtcgagctgctacccactgactggtccatgcacagcgt                                                                                         <  1:141839‑M2/150‑56 (MQ=255)                                                       gcAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAg                                                                                         >  1:89351/1‑150 (MQ=255)                                                        cAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGagcgccatttgcgcaaggtcgagctgctacccactgactggtccatgcacagcgtg                                                                                        <  2:514178‑M2/150‑57 (MQ=255)                                                         aaaTGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGagcgccatttgcgcaaggtcgagctgctacccactgactggtccatgcacagcgtga                                                                                       >  1:514178‑M2/1‑93 (MQ=255)                                                                     aGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAAGCGCCTCCCGGCGCCCCAGGGGCATAGAGCAgg                                                                           <  2:262199/150‑1 (MQ=255)                                                                      gCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAGGGGCATAGAGCAGGt                                                                          >  2:405337/1‑150 (MQ=255)                                                                                                   cccAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAGGGGCATAGAGCAGGTACTGATCGTCCTGCACCAGGCACAGCAGa                                             <  2:463183/150‑1 (MQ=255)                                                                                                      agcagGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGagcgccatttgcgcaaggtcgagctgctacccactgactggtccatgcacagcgtgacgctcgcgccgatcaagtcgcagcagtggccggatgtgctcaaag                                          >  2:141839‑M2/1‑48 (MQ=255)                                                                                                       gcagGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAGGGGCATAGAGCAGGTACTGATCGTCCTGCACCAGGCACAGCAGATCCt                                         <  2:434528/150‑1 (MQ=255)                                                                                                        cagGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATGTGGAGCGCCCATTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAGGGGCATAGAGCAGGTACTGATCGTCCTGCACCAGGCACAGCAGATCCtt                                        >  2:119646/1‑150 (MQ=255)                                                                                                                         ccGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAGGGGCATAGAGCAgg                                                                           <  1:419433/98‑1 (MQ=255)                                                                                                                         ccGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAGGGGCATAGAGCAgg                                                                           >  2:419433/1‑98 (MQ=255)                                                                                                                         ccGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAGGGGCATAGAGCAGGTACTGATCGTCCTGCACCAGGCACAGTAGATCCTTCAAGGGCGTTTGCGCAc                       >  2:200920/1‑150 (MQ=255)                                                                                                                                           tACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAGGGGCATAGAGCAGGTACTGATCGTCCTGCACCAGGCACAGCAGATCCTTCAAGGGCGTTTGCGCACCATTGAGGCAAACCAGAc     <  2:89351/150‑1 (MQ=255)                                                                                                                                            aCCGATTTCGAGCGCCATTTTTTCGAGTGAATCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAGGGGCATAGAGCAGGTACTGATCGTCCTGCACCAGGCACAGCAGATCCTTCAAGGGCGTTTGCGCACCATTGAGGCAAACCAGAcc    >  1:117445/1‑150 (MQ=255)                                                                                                                                              cGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAGGGGCATAGAGCAGGTACTGATCGTCCTGCACCAGGCACAGCAGATCCTTCAAGGGCGTTTGCGCACCATTGAGGCAAACCAGACCgg  >  1:170796/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                               GCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAGGGGCATAGAGCAGGTACTGATCGTCCTGCACCAGGCACAGCAGATCCTTCAAGGGCGTTTGCGCACCATTGAGGCAAACCAGACCGG  >  NC_002947/5246923‑5247213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.