New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6006595 =	12 (0.510)	7 (0.420)	7/182	NT	59.4%	intergenic (+7/+92)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator
	?	NC_002947	6006679 =	1 (0.060)					intergenic (+91/+8)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator

TCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTG  >  NC_002947/6006602‑6006822                                                                              |                                                                                                                                                TCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATGCGACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCAAATCCGCCAAATCCATGGCCGCCACGTCGCCTTCCAGTAACg                                                                         <  2:88424‑M1/150‑1 (MQ=255)           CTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTc                                                                                                                     <  1:265248‑M1/96‑1 (MQ=255)           CTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTc                                                                                                                     >  2:265248‑M1/1‑96 (MQ=255)                ccgctcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCgg                                                                                                            >  1:292557‑M2/63‑100 (MQ=255)                ccgctcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCgg                                                                                                            <  2:292557‑M2/38‑1 (MQ=255)                    tcccacagttcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCAGCAGGATTTCCACATCCGGCAAATCCAt                                                                                                   <  1:442565‑M2/47‑1 (MQ=255)                    tcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCAGCAGGATTTCCACATCCGGCAAATCCAt                                                                                                   >  2:442565‑M2/59‑105 (MQ=255)                      ccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt                                                    >  1:123295‑M2/57‑150 (MQ=255)                      CCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt                                                    <  2:517042‑M1/150‑1 (MQ=255)                       cacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTc                                                                                       >  2:558233‑M2/56‑114 (MQ=255)                       cacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTc                                                                                       <  1:558233‑M2/59‑1 (MQ=255)                              aCAGGGCATACGACCTGTGGGAGCGGGCGAGCTCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCt                                            >  2:89896/1‑150 (MQ=255)                                     aTACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCCCCGCCTCGCCggg                                     >  2:150045/1‑150 (MQ=255)                                      tACGACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGt                                    <  1:88424/150‑1 (MQ=255)                                         gACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAATGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCa                                                                               <  2:408223/104‑1 (MQ=255)                                         gACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAATGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCa                                                                               >  1:408223/1‑104 (MQ=255)                                                    gcgggctcgcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCa                      >  1:170110‑M2/27‑150 (MQ=255)                                                        gcgagcccgcgaagaggccggtGCAGGTAATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGgta                  >  2:97492‑M2/23‑150 (MQ=255)                                                             cccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAAt             >  2:351168‑M2/18‑150 (MQ=255)                                                                        gccggtGCAGGTGATCAAAGACGCGGCCGGATTAACACATTCGGCAAGTCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTg  >  1:423786‑M2/7‑150 (MQ=255)                                                                              |                                                                                                                                                TCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTG  >  NC_002947/6006602‑6006822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.