Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,550,517 | T→G | 25.2% | I292S (ATC→AGC) | groL → | chaperonin GroEL |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,550,517 | 0 | T | G | 25.2% | 13.8 / 6.5 | 16 | I292S (ATC→AGC) | groL | chaperonin GroEL |
Reads supporting (aligned to +/- strand): ref base T (5/7); new base G (2/2); total (7/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.53e-01 |
ACTGCTGATCGTTGCCGAAGACGTTGAAGGTGAAGCGCTGGCTACCCTGGTAGTCAACAACATGCGCGGCATCGTCAAGGTTGCTGCAGTCAAGGCTCCGGGCTTCGGCGATCGCCGCAAGGCCATGCTGCAGGACATCGCTGTCCTGACTGGCGGCCAGGTCATCTCCGAAGAAATCGGCCTGTCCCTGGAAACCGCTACCCTGGAGCACCTGGGTAACGCCAAGCGCGTCATCCTGTCCAAGGAAAACACCACCATCATCGACGGTGCTGGCGCTGACACCG > NC_002947/1550380‑1550663 | aCTGCTGATCGTTGCCGAAGACGTTGAAGGTGAAGCGCTGGCTACCCTGGTAGTCAACAACATGCGCGGCATCGTCAAGGTTGCTGCAGTCAAGGCTCCGGGCTTCGGCGATCGCCGCAAGGCCATGCTGCAGGACAGCGATGTCCTgca < 2:378055/150‑3 (MQ=255) gCCGAAGACGTTGAAGGTGAAGCGCTGGCTACCCTGGTAGTCAACAACATGCGCGGCATCGTCAAGGTTGCTGCAGTCAAGGCTCCGGGCTTCGGCGATCGCCGCAAGGCCATGCTGCAGGACATCGCTGTCCTGACTGGCGGCCAGGTc < 2:406440/150‑1 (MQ=255) ccGAAGACGTTGAAGGTGAAGCGCTGGCTACCCTGGTAGTCAACAACATGCGCGGCATCGTCAAGGTTGCTGCAGTCAAGGCTCCGGGCTTCGGCGATCGCCGCAAGGCCATGCTGCAGGACAGCGATGTCCTgcag > 1:467419/1‑134 (MQ=255) ccGAAGACGTTGAAGGTGAAGCGCTGGCTACCCTGGTAGTCAACAACATGCGCGGCATCGTCAAGGTTGCTGCAGTCAAGGCTCCGGGCTTCGGCGATCGCCGCAAGGCCATGCTGCAGGACAGCGATGTCCTgcag < 2:467419/137‑4 (MQ=255) tACCCTGGTAGTCAACAACATGCGCGGCATCGTCAAGGTTGCTGCAGTCAAGGCTCCGGGCTTCGGCGATCGCCGCAAGGCCATGCTGCAGGACATCGCTGTCCTGACTGGCGGCCAGGTCATCTCCGAAGAAATCGGCCTGTCCCTGGa > 1:559705/1‑150 (MQ=255) tACCCTGGTAGTCAACAACATGCGCGGCATCGTCAAGGTTGCTGCAGTCAAGGCTCCGGGCTTCGGCGATCGCCGCAAGGCCATGCTGCAGGACATCGCTGTCCTGACTGGCGGCCAGGTCATCTCCGAAGAAATCGGCCTGTCCCTGGa < 2:259017/150‑1 (MQ=255) gtGGTAGTCAACAACATGCGCGGGATCGTCAAGGTTGCTGCAGTCAAGGCTCCGGGCTTCGGCGATCGCCGCAAGGCAATGCGGCAGGACATAGCTGTGCTGACTGGGGGCCAGGTCATATCCGAAGAAATCGGCATGTCGCTGGAAAcg > 2:160388/2‑149 (MQ=255) gcgcGGCATCGTCAAGGTTGCTGCAGTCAAGGCTCCGGGCTTCGGCGATCGCCGCAAGGCCATGCTCCAGGACATCGCTGTCCTGACTGGCGGCCAGGTCATCTCCGAAGAAATCGGCCTGTCCCTGGAAACCGCTACCCTGGAGCACCt < 1:297047/150‑1 (MQ=255) aGGCTCCGGGCTTCGGCGATCGCCGCAAGGCCATGCTGCAGGACATCGCTGTCCTGACTGGCGGCCAGGTCATCTCCGAAGAAATCGGCCTGTCCCTGGAAACCGCTACCCTGGAGCACCTGGGTAACGCCAAGCGCGTCATCCTGTCCa > 1:147012/1‑150 (MQ=255) tCCGGGCTTCGGCGATCGCCGCAAGGCCATGCTGCAGGACATCGCTGTCCTGACTGGCGGCCAGGTCATCTCCGAAGAAATCGGCCTGTCCCTGGAAACCGCTACCCTGGAGCACCTGGGTAACGCCAAGCGCGTCATCCTGTCCAAGGa > 2:589927/1‑150 (MQ=255) ggCTTCGGCGATCGCCGCAAGGCCATGCTGCAGGACATCGCTGTCCTGACTGGCGGCCAGGTCATCTCCGAAGAAATCGGCCTGTCCCTGGAAACCGCTACCCTGGAGCACCTGGGTAACGCCAAGCGCGTCATCCTGTCCAAGGAAAac < 2:209420/150‑1 (MQ=255) gtCGGCGATCGCCGCAAGGCCATGCTGCAGGACATAGCTGTCATGACTGGCGGCCAGGTCATCGCCGAAGAAATCGGCCTGTCCCTGGAAACCGCTACCCTGGAGCACCTGGGTAACGCCAAGCGCGTCATCCTGTCCAAGGAAAAcacc < 2:559705/149‑1 (MQ=255) gCCATGCTGCAGGACATCGCTGTCCTGACTGGCGGCCAGGTCATCTCCGAAGAAATCGGCCTGTCCCTGGAAACCGCTACCCTGGAGCACCTGGGTACCGCCTTGCTCGTCATCCTGTCCAAGGAAAACACCACCATCATCGACGGTGCt < 1:569888/150‑1 (MQ=255) tgcAGGACATCGCTGTCCTGACTGGCGGCCAGGTCATCTCCGAAGAAATCGGCCTGTCCCTGGAAACCGCTACCCTGGAGCACCTGGGTAACGCCAAGCGCGTCATCCTGTCCAAGGAAAACACCACCATCATCGACGGTGCTGGCGCTg > 2:375116/1‑150 (MQ=255) tcAGGACAGCGATGTCCTGACTGGCGGCCAGGTCATCTCCGAAGAAATCGGCCTGTCCCTGGAAACCGCTACCCTGGAGCACCTGGGTAACGCCAAGCGCGTCATCCTGTCCAAGGAAAACACCACCATCATCGACGGTGCTGGCGCTGa > 1:143709/2‑150 (MQ=255) aCATCGCTGTCCTGACTGGAGGCCAGGTCATCTCCGAAGAAATCGGCCTGTCCCTGGAAACCGCTACCCTGGAGCACCTGAGTAACGCCAAGCGCGTCATCCTGTCCAAGGAAAACACCACCATCATCGACGGTGCTGGCGCTGACACCg < 2:464649/150‑1 (MQ=255) | ACTGCTGATCGTTGCCGAAGACGTTGAAGGTGAAGCGCTGGCTACCCTGGTAGTCAACAACATGCGCGGCATCGTCAAGGTTGCTGCAGTCAAGGCTCCGGGCTTCGGCGATCGCCGCAAGGCCATGCTGCAGGACATCGCTGTCCTGACTGGCGGCCAGGTCATCTCCGAAGAAATCGGCCTGTCCCTGGAAACCGCTACCCTGGAGCACCTGGGTAACGCCAAGCGCGTCATCCTGTCCAAGGAAAACACCACCATCATCGACGGTGCTGGCGCTGACACCG > NC_002947/1550380‑1550663 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |