| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,850,090 | A→C | 16.0% | Q604P (CAG→CCG) | PP_3397 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,850,090 | 0 | A | C | 16.0% | 51.3 / 5.0 | 25 | Q604P (CAG→CCG) | PP_3397 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (11/10); new base C (2/2); total (13/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01 | |||||||||||
CATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAACCACAGCCTTCACCACCACCTTCACCTACCAGGCACGTGACTCACTGGGGGGTCTGTCCACCCCAAGTACGGTC > NC_002947/3849950‑3850235 | cATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAgccggccgc > 2:85742/1‑150 (MQ=255) tCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAgccggccgccg > 2:601397/1‑150 (MQ=255) tCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGCCGTg > 1:262087/1‑150 (MQ=255) tCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGCCGTg < 2:262087/150‑1 (MQ=255) gCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGccggccggcggccggctg < 2:596354/150‑5 (MQ=255) ccGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCAGCCAGCCGGCCGCCGGCCGTg > 1:535804/1‑121 (MQ=255) ccGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGCCGTg < 2:535804/121‑1 (MQ=255) ggAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGCCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGAc < 1:95504/150‑1 (MQ=255) gCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCa < 1:85742/150‑1 (MQ=255) gCCATTGACCATCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAAc < 1:36425/150‑1 (MQ=255) aTTGACCATCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAACcac > 2:94754/1‑150 (MQ=255) cATCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAAc > 2:97177/1‑141 (MQ=255) cATCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAAc < 1:97177/141‑1 (MQ=255) aTCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCCGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAACCACAGCCTTc > 2:64375/1‑150 (MQ=255) aTCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCCGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAACCACAGCCTTc > 2:64084/1‑150 (MQ=255) cAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGc < 1:243876/129‑1 (MQ=255) cAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGc > 2:243876/1‑129 (MQ=255) ccAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGTCGTGGCACGGTCAGCACCGACGACAACCCAGCTGGGTATACCCCACCGGCCACTGTAACCACAGCCTTCACCACCACCTTCa > 2:476421/1‑150 (MQ=255) cAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCCGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAACCACAGCCTTCACCACCACCTTCAc < 1:64084/150‑1 (MQ=255) cAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCCGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAACCACAGCCTTCACCACCACCTTCAc < 1:64375/150‑1 (MQ=255) cAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAACCACAGCCTTCACCACCACCTTCAc < 1:94754/150‑1 (MQ=255) gCCAACATCACCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAACCACAGCCTTCACCACCACCTTCACCTACCAGGCACGTGACTCACTGGGGGGTCTGTCCACCCCa > 2:92902/1‑150 (MQ=255) cAACATCACCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAACCACAGCCTTCACCACCACCTTCACCTACCAGGCACGTGACTCACTGGGGGGTCTGTCCACCCCAAg > 2:336377/1‑150 (MQ=255) aCCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAACCACAGCCTTCACCACCACCTTCACCTACCAGGCACGTGACTCACTGGGGGGTCTGTCCCCCCCAAGTACGGTc > 2:297009/1‑150 (MQ=255) aCCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAACCACAGCCTTCACCACCACCTTCACCTACCAGGCACGTGACTCACTGGGGGGTCTGTCCACCCCAAGTACGGTc < 1:601397/150‑1 (MQ=255) | CATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCAACGACACCGATCCAGAAGGCAACGTACCGCTGAGCGTGGCCAACATCACCCAGCCGGCCGCCGGCCGTGGCACGGTCAGCACCGACGGCACAACCGTGACCTATACCCCACCGGCCACTGTAACCACAGCCTTCACCACCACCTTCACCTACCAGGCACGTGACTCACTGGGGGGTCTGTCCACCCCAAGTACGGTC > NC_002947/3849950‑3850235 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |