| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,882,868 | C→T | 18.2% | intergenic (+67/‑158) | oprN → / → PP_3428 | multidrug RND transporter outer membrane protein OprN/TPR repeat‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,882,868 | 0 | C | T | 18.2% | 41.2 / 4.9 | 22 | intergenic (+67/‑158) | oprN/PP_3428 | multidrug RND transporter outer membrane protein OprN/TPR repeat‑containing protein |
| Reads supporting (aligned to +/- strand): ref base C (10/8); new base T (2/2); total (12/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.34e-01 | |||||||||||
TCGACCTTTATCGCGGCATCGTCTCGATCTACAAGGCCCTGGGTGGCGGCTGGCAACCGGAGACGGTGGCCAGCGCGCACTGATTCCACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCGTGCCCGGTTCGGTTGCATTTACCCCCCGGCTGGCCCAAGCTCTGCCCTTCCCGCCGCCA > NC_002947/3882719‑3883014 | tCGACCTTTATCGCGGCATCGTCTCGATCTACAAGGCCCTGGGTGGTGGCTGGCAACCGGAGACGGTGGCCAGCGCGCACTGATTCCACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGccc > 1:295504/1‑150 (MQ=255)tCGACCTTTATCGCGGCATCGTCTCGATCTACAAGGCCCTGGGTGGCGGCTGGCAACCGGAGACGGTGGCCAGCGCGCACTGATTCCACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGccc > 2:29561/1‑150 (MQ=255) gTCTCGATCTACAAGGCCCTGGGTGGCGGCTGGCAACCGGAGACGGTGGCCAGCGCGCACTGATTCCACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTg > 1:573652/1‑150 (MQ=255) tctcGATCTACAAGGCCCTGGGTGGCGGCTGGCAACCGGAGACGGTGGCCAGCGCGCACTGATTCCACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCTAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGc > 2:438402/1‑150 (MQ=255) gATCTACAAGGCCCTGGGTGGCGGCTGGCAACCGGAGACGGTGGCCAGCGCGCACTGATTCCACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATc > 1:531432/1‑150 (MQ=255) aCAAGGCCCTGGGTGGCGGCTGGCAACCGGAGACGGTGGCCAGCGCGCACTGATTCCACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTAtt > 1:40165/1‑150 (MQ=255) aGGCCCTGGGTGGCGGCTGGCAACCGGAGACGGTGGCCAGCGCGCACTGATTCCACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCAc < 1:179645/150‑1 (MQ=255) aGGCCCTGGGTGGCGGCTGGCAACCGGAGACGGTGGCCAGCGCGCACTGATTCCACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCAc < 2:40165/150‑1 (MQ=255) aaCCAGAAACGGTGGCCAGCTCGCACTGATTCCACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGaa > 2:316346/1‑150 (MQ=255) cAGCGCGCACTGATTCCACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGgcctg > 1:402930/1‑150 (MQ=255) cACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGc < 1:29561/150‑1 (MQ=255) cTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCgg > 1:329036/1‑149 (MQ=255) ttggCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCGTGCCCGGTTCGGTTGCCTTTAc > 1:393031/1‑150 (MQ=255) aaCCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCGTGCCCGGTTCGGTTGCATTTACCCCCCGGCTGGccc < 2:295504/150‑1 (MQ=255) tGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCGTGCCCGGTTCGGTTGCATTTACCCCCCGGCTGGCCCAAGctct < 2:531432/150‑1 (MQ=255) ccccGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGGGGTTATTTTTATTTCTCCTGGCCAACGGCGTGCCCGGTTTGGTTGCATTCACCCCCCGGCTGGCCCAAGCTCTGc > 1:107622/1‑150 (MQ=255) cccGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCGTGCCCGGTTCGGTTGCATTTACCCCCCGGCTGGCCCAAGCTCTGcc < 2:402930/150‑1 (MQ=255) ccGCGGGCCATGGCCTGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCGTGCCCGGTTCGGTTGCATTTACCCCCCGGCTGGCCCAAGctct > 1:394427/1‑146 (MQ=255) ccGCGGGCCATGGCCTGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCGTGCCCGGTTCGGTTGCATTTACCCCCCGGCTGGCCCAAGctct < 2:394427/146‑1 (MQ=255) cgcgggCCATGGCCTGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCGTGCCCGGTTCGGTTGCATTTACCCCCCGGCTGGCCCAAGctct < 1:513499/141‑1 (MQ=255) cgcgGGCCATGGCCTGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCACTACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCGTGCCCGGTTCGGTTGCATTTACCCCCCGGCTGGCCCAAGctct > 2:513499/1‑145 (MQ=255) cATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCGTGCCcggttcggtt < 1:550346/109‑1 (MQ=255) cATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCGTGCCcggttcggtt > 2:550346/1‑109 (MQ=255) gCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCGTGCCCGGTTCGGTTGCATTTACCCCCCGGCTGGCCCAAGCTCTGCCCTTCCCGCCGCCa < 2:115078/150‑1 (MQ=255) | TCGACCTTTATCGCGGCATCGTCTCGATCTACAAGGCCCTGGGTGGCGGCTGGCAACCGGAGACGGTGGCCAGCGCGCACTGATTCCACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCACCCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCGTGCCCGGTTCGGTTGCATTTACCCCCCGGCTGGCCCAAGCTCTGCCCTTCCCGCCGCCA > NC_002947/3882719‑3883014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |