Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 86,240 | G→T | 10.0% | L160M (CTG→ATG) | PP_0075 ← | choline sulfate transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 86,240 | 0 | G | T | 10.0% | 110.7 / 2.9 | 40 | L160M (CTG→ATG) | PP_0075 | choline sulfate transporter |
Reads supporting (aligned to +/- strand): ref base G (19/17); new base T (2/2); total (21/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.19e-01 |
AACAGGCTCGGCCAGCGTGGGCGCCAGAGTTTGAAGGCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGACCAGCGCGCCGAAGCGCAATAGCCCGAGCAGCAGCTGGAAAATGCCGCCGA > NC_002947/86092‑86386 | aaCAGGCTCGGCCAGCGTGGGCGCCAGAGTTTGAAGGCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAgg > 2:57817/1‑150 (MQ=255) gcgcGGCCAGCGTGGGCGCCAGAGTTTGAAGGCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCAt > 1:610747/4‑150 (MQ=255) gCTCGGCCAGCGTGGGCGCCAGAGTTTGAAGGCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCAt < 1:487141/150‑1 (MQ=255) cTCGGCCAGCGTGGGCGCCAGAGTTTGAAGGCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATg > 1:314812/1‑150 (MQ=255) ggCCAGCGTGGGCGCCAGAGTTTGAAGGCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGccc > 1:258731/1‑150 (MQ=255) gggCGCCAGTGGTTTATGGCCGCTCCGATCGCGACGGTGGCCAGGCCCAGCAGCAAGGAATGTAGGTCGACCTCGCCTGCGTGGCTTGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTg < 2:201096/150‑1 (MQ=255) cgcCAGAGTTTGAAGGCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGt < 2:314812/150‑1 (MQ=255) cgcCAGAGTTTGAAGGCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCAAGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGt > 2:142877/1‑150 (MQ=255) gcCAGAGTTTGAAGGCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTa > 2:351682/1‑150 (MQ=255) ccAGAGTTTGAAGGCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCATGGc > 2:305473/1‑129 (MQ=255) ccAGAGTTTGAAGGCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCATGGc < 1:305473/129‑1 (MQ=255) cAGAGTTTGAAGGCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGc > 2:291570/1‑150 (MQ=255) gagTTTGAAGGCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTg < 1:487600/150‑1 (MQ=255) gCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGACa > 2:210920/1‑150 (MQ=255) gTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCAccc > 2:200662/1‑150 (MQ=255) tGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCAcccc > 1:310860/1‑149 (MQ=255) cAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCGAGGCAATGACGATGGCGGCACCCAGCGt < 1:86810/150‑1 (MQ=255) aaggaaggTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCATGGCCCTGCCcagccag < 1:520352/93‑4 (MQ=39) aaggaaggTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCATGGCCCTGCCcagccag > 2:520352/1‑90 (MQ=39) ggaaggTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGcaccac < 1:200662/150‑1 (MQ=255) gaaggTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACg > 1:80999/1‑150 (MQ=255) taggtCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATg < 1:351682/150‑1 (MQ=255) tGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGAc < 1:291570/150‑1 (MQ=255) tggcCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGc < 2:602500/111‑1 (MQ=255) tggcCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGc > 1:602500/1‑111 (MQ=255) gTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGACCAGCGCGCCGAAgcg > 1:552209/1‑150 (MQ=255) cTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTg > 1:277913/1‑97 (MQ=255) cTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTg < 2:277913/97‑1 (MQ=255) cTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGAc > 1:163786/1‑132 (MQ=255) cTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGAc < 2:163786/132‑1 (MQ=255) gCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGACCAGCGCGCCGAAGCGCAATa < 2:610747/150‑1 (MQ=255) ggTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGACCAGCGCGCCGAAGCGCAATAGccc < 1:300809/150‑1 (MQ=255) ggTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGAGTAGCTGGCCCAAGGCAATGACGAAGGAGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGGCGAAGTTTACCAGCGCGGCGAAACGCAATAGccc > 2:83437/1‑150 (MQ=255) gcgcGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGACCAGCGCGCCGAAGCGCAATAGCCCGagcagca > 1:338066/1‑150 (MQ=255) cgGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGACCAGCGCGCCGAAGCGCAATAGCCCGAGCAGCAGCt < 1:333810/150‑1 (MQ=255) ctggctggGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGACCAGCGCGCCGAAGCGCAATAGCCCGAGCAGCAGCTGGAAAAt > 2:505545/1‑150 (MQ=255) gctggGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGACCAGCGCGCCGAAGCGCAATAGCCCGAGCAGCAGCTGGAAAATgcc < 2:258731/150‑1 (MQ=255) tggGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGTCGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGACCAGCGCGCCGAAGCGCAATAGCCCGAGCAGCAGCTGGAAAATgccgc < 1:57817/150‑1 (MQ=255) tggGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGACCAGCGCGCCGAAGCGCAATAGCCCGAGCAGCAGCTGGAAAATgccg > 2:130515/1‑149 (MQ=255) tggGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGACCAGCGCGCCGAAGCGCAATAGCCCGAGCAGCAGCTGGAAAATgccg < 1:130515/149‑1 (MQ=255) gCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGACCAGCGCGCCGAAGCGCAATAGCCCGAGCAGCAGCTGGAAAATGCCGCCGa > 2:451414/1‑150 (MQ=255) | AACAGGCTCGGCCAGCGTGGGCGCCAGAGTTTGAAGGCCGCACCGATCACGACGGTGGCCAGGCCCAGCAGCAAGGAAGGTAGGTCGACCTCGCCTGCGTGGCTGGCCAGGTCCTGCACGGTCATCAGCGCGGTGGCCTGGCTGGGCAGGGCCATGCCCAGCAGGTTGGGTAGCTGGCCCAAGGCAATGACGATGGCGGCACCCAGCGTGAAGCCGAGCACCACGGAATGGGAGACGAAGTTGACCAGCGCGCCGAAGCGCAATAGCCCGAGCAGCAGCTGGAAAATGCCGCCGA > NC_002947/86092‑86386 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |