| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,142,117 | G→A | 16.7% | F106F (TTC→TTT) | arcD‑I ← | arginine/ornithine antiporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,142,117 | 0 | G | A | 16.7% | 48.9 / 4.8 | 24 | F106F (TTC→TTT) | arcD‑I | arginine/ornithine antiporter |
| Reads supporting (aligned to +/- strand): ref base G (12/8); new base A (2/2); total (14/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.61e-01 | |||||||||||
TTGATGCCGCGCAGTACCAGGAAGTGCACCGCCCACAACAGGATCGACGCGCCAATTATGGCGGCTGGGGTGTTGCCTTCACCGAAGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGCCCATATAGTCGCCGAAGCCAGCCTTGGCATACGCATACACCCCACCATCCAGGTCGGGCTTGCGGTTGGCCAGG > NC_002947/1141992‑1142249 | ttGATGCCGCGCAGTACCAGGAAGTGCACCGCCCACAACAGGATCGACGCGCCAATTATGGCGGCTGGGGTGTTGCCTTCACCGAAGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCccagccag > 1:274921/1‑150 (MQ=255) tGCCGCGCAGTACCAGGAAGTGCACCGCCCACAACAGGATCGACGCGCCAATTATGGCGGCTGGGGTGTTGCCTTCACCGAAGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCAc < 2:274921/150‑1 (MQ=255) aCCGCCCACAACAGGATCGACGCGCCAATTATGGCGGCTGGGGTGTTGCCTTCACCGAAGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAg > 1:445077/1‑150 (MQ=255) ccGCCCACAACAGGATCGACGCGCCAATTATGGCGGCTGGGGTGTTGCCTTCACCGAAGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAgg > 1:253701/1‑150 (MQ=255) aacaGGATCGACGCGCCAATTATGGCGGCTGGGGTGTTGCCTTCACCGAAGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGccc > 2:447393/1‑150 (MQ=255) aacaGGATCGACGCGCCAATTATGGCGGCTGGGGTGTTGCCTTCACCGAAGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGccc > 1:398780/1‑150 (MQ=255) gcggcTGGGGTGTTGCCTTCACCGAAGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGCCCATATAGTCGCCGAAGCCAGCCTTg < 2:398780/150‑1 (MQ=255) gtTGCCTTCACCGAAGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGCCCATATAGTCGCCGAAGCCAGCCTTGgcatacgcata < 1:213019/150‑1 (MQ=255) cTTCACCGAAGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGCCCATATAGTCGCCGAAGCCAGCCTTGGCATACGCATACAccc > 1:229004/1‑150 (MQ=255) ttCACCGAAGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGCCCATATAGACGCCGAAGCCAGCCTTGGCATACGCATACAcccc < 2:253701/150‑1 (MQ=255) aaGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGCCCATATAGTCGCCGAAGCCAGCCTTGGCATACGCATaca < 1:409381/139‑1 (MQ=255) aaGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGCCCATATAGTCGCCGAAGCCAGCCTTGGCATACGCATaca > 2:409381/1‑139 (MQ=255) aaGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGCCCATATAGTCGCCGAAGCCAGCCTTGGCATACGCATACACCCCACCATcc > 2:309335/1‑150 (MQ=255) aaGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACAAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAg < 1:257869/99‑1 (MQ=255) aaGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACAAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAg < 1:257576/99‑1 (MQ=255) aaGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACAAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAg > 2:257576/1‑99 (MQ=255) aaGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACAAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAg > 2:257869/1‑99 (MQ=255) gggAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGCCCATATAGTCGCCGAAGCCAGCCTTGGCATACGCATACACCCCACCATCCAGGTCg > 1:253772/1‑150 (MQ=255) ggAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGCCCATATAGTCGCCGAAGCCAGCCTTGGCATACGCATACACCCCACCATCCAGGTCgg > 1:535301/1‑150 (MQ=255) gaagaaGTAGCCCAGGGTGCTGAACAGCAGCGCGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATGCAGTAGGCCCAGGCTGAGGAAAAGCCCATATAGTCGCCGAAGCCAGCCTTGGCATACGCATACACCCCACCATCCAGGTCggg > 1:533497/1‑150 (MQ=255) aagaagTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGACAAACCCATGTAGTCGCCGAAGCCAGCCTTGGCATACGCATACACCCCACCATCCAGGTCGGGc > 2:83979/1‑150 (MQ=255) gCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGCCCATATAGTCGCCGAAGCCAGCCTTGGCATACGCATACACCCCACCATCCAGGTCGGGCTTGCGGtt < 1:447393/150‑1 (MQ=255) ggTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGCCCATATAGTCGCCGAAGCCAGCCTTGGCATACGCATACACCCCACCATCCAGGTCGGGCTTGCGGTTCGCCAg < 1:309335/150‑1 (MQ=255) gTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGCCCATATAGTCGCCGAAGCCAGCCTTGGCATACGCATACACCCCACCATCCAGGTCGGGCTTGCGGTTGGCCAgg < 2:229004/150‑1 (MQ=255) | TTGATGCCGCGCAGTACCAGGAAGTGCACCGCCCACAACAGGATCGACGCGCCAATTATGGCGGCTGGGGTGTTGCCTTCACCGAAGATCGGGAAGAAGTAGCCCAGGGTGCTGAACAGCAGCACGAAGTAGCCGACGTTGCCCAGCCAGGCACTGATCCAGTAGCCCCAGGCTGAGGAAAAGCCCATATAGTCGCCGAAGCCAGCCTTGGCATACGCATACACCCCACCATCCAGGTCGGGCTTGCGGTTGGCCAGG > NC_002947/1141992‑1142249 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |