| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,941,126 | Δ1 bp | 6.6% | coding (118/531 nt) | PP_3475 ← | type II secretion system pseudopilin PulG‑like signal peptide protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,941,126 | 0 | T | . | 6.6% | 267.5 / 13.0 | 91 | coding (118/531 nt) | PP_3475 | type II secretion system pseudopilin PulG‑like signal peptide protein |
| Reads supporting (aligned to +/- strand): ref base T (43/41); new base . (4/2); total (48/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.32e-01 | |||||||||||
CTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATG > NC_002947/3940977‑3941272 | cTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCt > 1:1713750/1‑150 (MQ=255) tGCGGGTAGCGGTTGTCGTAAGGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTc < 1:122486/150‑1 (MQ=255) tGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTc < 2:2236282/150‑1 (MQ=255) gggTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCGGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGcc < 1:12174/150‑1 (MQ=255) aGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGAGCGC‑CGCCCAgc < 2:1619204/150‑2 (MQ=255) aGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGa < 2:1666642/150‑1 (MQ=255) cGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑c < 2:2139821/150‑1 (MQ=255) cGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACAAACAGCCGAATACGTTCTCGGGCGCGCTGGGCG‑GCGCTCGCCCAGAT‑c > 1:2376713/1‑150 (MQ=255) gTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGt < 2:2382934/150‑1 (MQ=255) tGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGTCCAGAT‑CGTGc < 2:283923/150‑1 (MQ=255) tCCTGTAGCAGGTCGGCCAGATCCTGGGTGTACTGAGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCg > 1:1774155/1‑150 (MQ=255) cTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGt > 2:77364/1‑150 (MQ=255) tGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTg < 2:292310/150‑1 (MQ=255) tGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTg > 1:1468172/1‑150 (MQ=255) gTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTgg < 2:572585/150‑1 (MQ=255) aGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCCAGGCCGGACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGgccgcc < 1:1333613/150‑1 (MQ=255) tCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAgg > 1:222582/1‑150 (MQ=255) tCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAgg > 1:222570/1‑150 (MQ=255) ccTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACgctgc < 1:2172161/150‑1 (MQ=255) cTGGGGGTACTGGGCCAGCCCTGCCGAAGCGCGGTAGTAGCTGCGAAGGGCTTAGGCATACTGGCTGCCGACCCGCAGCAACTGCCATTCGCGGTCGCGCTGGGCG‑GTGCTCGCCCAGAT‑CGTGCCGGTGGCGGCCGGGGCCACgccgct > 2:872956/1‑150 (MQ=255) tGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGctgctg > 1:1174211/1‑150 (MQ=255) ggggTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGAc > 2:774758/1‑150 (MQ=255) ggggTAATAGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCGAGGCTTGGGCATAGTGGCTGCCGACTCACAGCAACTGGCGTTCGCGGACGCGCTGGGCG‑GCGCTCACCCAGAT‑CGTGCCGGTGGCCGCCAAGGCCACGCGGCTGAc > 2:478295/1‑150 (MQ=255) gggTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGAcc < 1:774758/150‑1 (MQ=255) ggTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGAcc > 1:763266/1‑149 (MQ=255) ggTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGAcc < 2:763266/149‑1 (MQ=255) cggggCCAGCGCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAAt < 2:753984/148‑1 (MQ=255) tGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGTG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATc > 2:1874717/1‑150 (MQ=255) tGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATc > 2:295110/1‑150 (MQ=255) ggCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCACACGCTGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcag > 1:1341139/1‑150 (MQ=255) gCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCGCGCTGCTGACCGCAATcagc < 2:816129/150‑1 (MQ=255) gCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcagc > 1:1313207/1‑150 (MQ=255) ccAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCTGTGGTTGCCACGCTGCTGACCGCAATcagca < 1:664654/150‑1 (MQ=255) ccAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGAACTCGTGCTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcagca < 2:683244/150‑1 (MQ=255) gaGCCCTGGCGAGGCGCGGTAGTGGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcagcag < 2:247206/149‑1 (MQ=255) cAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCCCCCTcagcac < 2:223549/150‑2 (MQ=255) ccTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCagcagcagc < 2:1089423/150‑1 (MQ=255) cTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAgcagcagca < 1:1400759/150‑1 (MQ=255) tGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcagc > 1:1447316/1‑142 (MQ=255) tGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcagc < 2:1447316/142‑1 (MQ=255) tGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCAc < 2:2021791/150‑1 (MQ=255) gcgGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTa > 1:65417/1‑150 (MQ=255) gcgGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTa < 2:1468172/150‑1 (MQ=255) gCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTAt > 1:38445/1‑142 (MQ=255) gCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTAt < 2:38445/142‑1 (MQ=255) gCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAgcc > 2:2227671/1‑150 (MQ=255) gcAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGt > 1:1511513/1‑150 (MQ=255) cAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAAATGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGtt > 1:905160/1‑150 (MQ=255) aaGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTg > 1:1799260/1‑150 (MQ=255) ggCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGc < 2:1799260/150‑1 (MQ=255) gCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGcc > 2:1632992/1‑150 (MQ=255) gggCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCCGTCGTGAATGGCC‑GCGAT‑GCCCAGATGTACGCTGTTGGCCTCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTAc < 1:168360/150‑1 (MQ=255) aTACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATg > 1:840746/1‑125 (MQ=255) aTACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATg < 2:840746/125‑1 (MQ=255) aTACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCAtt > 2:758101/1‑150 (MQ=255) aCTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCa < 2:1174211/150‑1 (MQ=255) tGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGc > 1:1071125/1‑150 (MQ=255) tGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGc < 2:1774155/150‑1 (MQ=255) ggCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCg > 2:1003037/1‑150 (MQ=255) ccGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAagag > 1:1374964/1‑150 (MQ=255) gACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGc < 2:1071125/150‑1 (MQ=255) aCCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGACt > 2:326490/1‑150 (MQ=255) aCCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCACGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGTCAGCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTAACATGCAGCTAAGAGGCt > 1:1356224/1‑150 (MQ=255) ccACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcagcagca < 2:113180/95‑1 (MQ=255) ccACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcagcagca > 1:113180/1‑95 (MQ=255) ccACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAagag > 2:702120/1‑145 (MQ=255) ccACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAagag < 1:702120/145‑1 (MQ=255) acaGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCa > 1:797686/1‑150 (MQ=255) caGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTaaa > 1:852969/1‑111 (MQ=255) caGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTaaa < 2:852969/111‑1 (MQ=255) aGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATc > 1:2436518/1‑150 (MQ=255) aaCTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCAcg > 1:150540/1‑150 (MQ=255) aCTGGGGTTCGCGGTCGCGCTGGGCG‑GCGCTGGCTCAGAT‑CGTGCCGGTGGCCGGCAGGGCCACGCTGCTGACCGCAAGCAGCAGCAGGACCCCCAGGTATGGAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCAcgc < 1:2344395/150‑1 (MQ=255) tGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACgcgc > 2:859617/1‑150 (MQ=255) gCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGccc > 1:610696/1‑150 (MQ=255) gcgGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGNCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCtg > 1:2136433/1‑150 (MQ=255) gcgGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑AGTGCCGGTGGCCGCCAGGGCCACGCTGCTGAACGCAATCATAAGCCGGATCCGATGGTATGCAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCtg > 1:1124834/1‑150 (MQ=255) cgGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAg > 2:2447072/1‑86 (MQ=255) cgGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAg < 1:2447072/86‑1 (MQ=255) tCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGGAGAGGCTGCCATCAcgc < 1:2044443/136‑1 (MQ=255) tCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCAcgc > 2:2044443/1‑136 (MQ=255) tCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGc > 2:1581162/1‑150 (MQ=255) acgatcTGGGCGAGCGC‑CGCCCAGCT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGc > 1:2000161/6‑150 (MQ=255) gcgcTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCAc > 2:2402640/1‑150 (MQ=255) gatcTGGGCGAGCGC‑CGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCAc > 1:1220060/4‑150 (MQ=255) atcTGGGCGAGCGC‑CGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTAt > 2:1477671/3‑84 (MQ=38) atcTGGGCGAGCGC‑CGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTAt < 1:1477671/82‑1 (MQ=38) tcTGGGCGAGCGC‑CGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCg > 1:1933401/2‑150 (MQ=255) ggtg‑gcgCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATCCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGctct < 1:1874717/147‑1 (MQ=255) ggcg‑gcGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGctct < 1:295110/150‑1 (MQ=255) cgcTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATg < 2:222582/150‑1 (MQ=255) cgcTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATg < 2:222570/150‑1 (MQ=255) tCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGccctc < 2:1101845/126‑1 (MQ=255) tCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGccctc > 1:1101845/1‑126 (MQ=255) | CTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑GCGCTCGCCCAGAT‑CGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATG > NC_002947/3940977‑3941272 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |