| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,356,194 | Δ1 bp | 5.2% | coding (671/711 nt) | PP_2070 ← | AraC family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,356,194 | 0 | G | . | 5.2% | 305.9 / 10.7 | 97 | coding (671/711 nt) | PP_2070 | AraC family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (46/46); new base . (2/3); total (48/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.53e-01 | |||||||||||
Only 100 of 101 total aligned reads displayed.
GCATCACGATTGTCGCTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATCACCCGGGCACGGGCGCGCCATTGGCCAT > NC_002947/2356047‑2356338 | gCATCACGATTGTCGCTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCa < 2:342528/150‑1 (MQ=255) tCACGATTGTCGCTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATg‑g > 2:1983901/1‑150 (MQ=255) tCACGATTGTCGCTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATg‑g > 2:815940/1‑150 (MQ=255) tCACGATTGTCGCTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATg‑g > 1:1692194/1‑150 (MQ=255) cACGATTGTCGCTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATgtc > 2:1573388/1‑148 (MQ=255) cACGATTGTCGCTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑Gc < 2:422810/150‑1 (MQ=255) aCGATTGTCGCTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTCCGGTATTGGCAATGACTCGGCGCATg‑gac > 1:1108502/1‑148 (MQ=255) aCGATTGTCGCTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑Gcc > 2:705107/1‑150 (MQ=255) gATTGTCGCTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGa > 2:2130280/1‑150 (MQ=255) gATTGTCGCTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGa < 2:127406/150‑1 (MQ=255) tCGCTCAAAGGCCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATg > 2:279321/1‑150 (MQ=255) gCTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGC‑CATGCGCCGAgtgattg < 2:1922005/150‑7 (MQ=255) cTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATgcgc > 2:744058/1‑150 (MQ=255) cTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATgcgc < 1:1914741/150‑1 (MQ=255) tCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAg < 1:12110/142‑1 (MQ=255) tCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAg > 2:12110/1‑142 (MQ=255) tCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCt > 2:1284252/1‑150 (MQ=255) tCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGC‑CATGCGCCGAgtgattg > 1:1440417/1‑142 (MQ=255) tCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGC‑CATGCGCCGAgtgattg < 2:1440417/148‑7 (MQ=255) cAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCtt < 2:1350499/150‑1 (MQ=255) aaaGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTg > 2:679396/1‑150 (MQ=255) gTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACa > 2:2144229/1‑150 (MQ=255) tCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACAt < 1:2292999/150‑1 (MQ=255) tCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACAt < 1:244586/150‑1 (MQ=255) gTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATgg < 1:2130280/150‑1 (MQ=255) gTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATgg < 1:925154/150‑1 (MQ=255) tGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGc > 2:1367574/1‑150 (MQ=255) gAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTaaa > 2:1528689/1‑150 (MQ=255) gTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAggc > 2:1340779/1‑150 (MQ=255) gTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAggc > 2:2228176/1‑150 (MQ=255) gTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGC‑CATGCGCCGAgtggttg > 1:2168325/1‑123 (MQ=255) gTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGC‑CATGCGCCGAgtggttg < 2:2168325/129‑7 (MQ=255) aCGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAggcgctg > 1:1787415/1‑150 (MQ=255) cGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCGGCGCGCAAGCGGCGTCTGCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAggcgctgg < 1:24834/150‑1 (MQ=255) gAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCTGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAggcgctggc > 2:1743708/1‑150 (MQ=255) aGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAggcgctggcg < 1:186229/150‑1 (MQ=255) gTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGctc < 1:1768474/150‑1 (MQ=255) ttGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGctct > 2:580317/1‑150 (MQ=255) ttGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGctct < 1:2228176/150‑1 (MQ=255) ttGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACGCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGctct > 2:718469/1‑150 (MQ=255) tGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTg < 1:1367574/150‑1 (MQ=255) gCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTgg < 2:160687/150‑1 (MQ=255) ggCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGcc < 1:1795592/150‑1 (MQ=255) gCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCg < 2:2187017/150‑1 (MQ=255) tCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑TCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGc < 1:1573388/150‑1 (MQ=255) tCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGc < 2:1116154/150‑1 (MQ=255) tCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGc < 2:1787415/150‑1 (MQ=255) ccGCTGGCGCAAGCGGGACAACCCTGCGCGCAAGCCGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGGCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTTAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGc < 1:151448/149‑1 (MQ=255) gCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTc < 2:1692194/150‑1 (MQ=255) gCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTc > 2:482872/1‑150 (MQ=255) gCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGACGCTCAGCACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTc < 1:744058/150‑1 (MQ=255) tCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTAGAGCGCGGTACCGTTTTGGTATTCACGCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAgc > 1:2124354/1‑150 (MQ=255) cGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGt > 2:1793394/1‑150 (MQ=255) aaCCCTGCGCGCAAGCGTGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGa > 2:331933/1‑150 (MQ=255) aaCCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCATGCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGa > 2:1787107/1‑150 (MQ=255) aaCCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGa > 2:369284/1‑150 (MQ=255) cccTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACCCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGctct > 2:1812653/1‑118 (MQ=255) cccTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACCCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGctct < 1:1812653/118‑1 (MQ=255) cTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCgg > 2:1158427/1‑150 (MQ=255) tGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGc > 2:128638/1‑150 (MQ=255) gcgcgcAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGgcg < 1:1878384/66‑1 (MQ=255) gcgcgcAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGgcg > 2:1878384/1‑66 (MQ=255) cgcgcAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCtt < 1:2082516/150‑1 (MQ=255) gCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCg < 1:1743708/150‑1 (MQ=255) gggACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGc > 2:1153819/1‑150 (MQ=255) gACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCa < 1:1082131/150‑1 (MQ=255) aCAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGTCCTCGTCCAg < 2:1273118/150‑1 (MQ=255) aCAACCTGAGGCTCAGTACTCGCGCGCACTTTCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAg < 1:602494/150‑1 (MQ=255) aaCCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGTATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCCGCCAGGc > 2:210552/1‑150 (MQ=255) aaCCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGc < 1:1911243/150‑1 (MQ=255) aaCCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGc < 1:2056247/150‑1 (MQ=255) ccTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCAt > 1:970502/1‑150 (MQ=255) ccTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCACTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCAt > 2:1028341/1‑150 (MQ=255) tGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGTCATTg < 2:747559/150‑1 (MQ=255) tGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCAGCCAgcaatgc < 1:1340779/150‑7 (MQ=255) gtcTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTAGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTgctg > 1:1439952/3‑150 (MQ=255) gCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTgctgg < 1:369284/150‑1 (MQ=255) gCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTgctgg > 1:834560/1‑150 (MQ=255) tCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTgctggct < 2:2124354/150‑1 (MQ=255) tCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCg > 1:1878308/1‑126 (MQ=255) tCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCg < 2:1878308/126‑1 (MQ=255) tCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATc > 2:790508/1‑150 (MQ=255) gcgcgcgGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATCAc > 1:2104716/1‑150 (MQ=255) gcgcgcgGTACCGTTTGGCCAATCACTCGGCGCATG‑GCCGAGGCTGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATCAc < 1:256398/150‑1 (MQ=255) ggTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATCACCCGGGc > 2:577303/1‑150 (MQ=255) tACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCCGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCg > 1:1314237/1‑116 (MQ=255) tACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCg < 2:1314237/116‑1 (MQ=255) aCCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATCACCCGGGCACg > 2:238040/1‑150 (MQ=255) ccGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATCACCCGGGCACgg < 1:1528689/150‑1 (MQ=255) gTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATCACCCGGGCACGGgc < 1:331933/150‑1 (MQ=255) ccAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTgct > 2:441098/1‑119 (MQ=255) ccAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTgct < 1:441098/119‑1 (MQ=255) cAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATCACCCGGGCACGGGCGCGCCAt > 2:113190/1‑150 (MQ=255) aTCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATCACCCGGGCACGGGCGCGCCATTg < 2:179022/150‑1 (MQ=255) tCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATCACCCGGGCACGGGCGCGCCATTgg < 1:128638/150‑1 (MQ=255) tCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATCACCCgg < 1:837451/128‑1 (MQ=255) tCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATCACCCgg > 2:837451/1‑128 (MQ=255) tCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATCACCCGGGCACGGGCGCGCCATTGGCCAt > 2:1978964/1‑150 (MQ=255) gcgcATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAAc > 2:679195/1‑73 (MQ=255) gcgcATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAAc < 1:679195/73‑1 (MQ=255) | GCATCACGATTGTCGCTCAAAGGTCGTGATGCGAGGTTAACGAGGGTTGCATGGGCGTCGCTGTCGCAAGCGGGACAACCCTGCGCGCAAGCGGGACAACCTGAGGCTCAGTACTCGCGCGCGGTACCGTTTTGCCAATCACTCGGCGCATG‑GCCGAGGATGCGCTTGAACATGGCAGTAAAGGCGCTGGCGCTCTGGTAGCCGTGCTCCAGCGCAACGTTCAGGATCGGCTTGCCATCGGCCAGGCATTGCTGGCTGAGCATCACCCGGGCACGGGCGCGCCATTGGCCAT > NC_002947/2356047‑2356338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |