| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,523,097 | Δ1 bp | 5.3% | coding (4305/4446 nt) | PP_2212 → | leucine‑rich repeat‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,523,097 | 0 | G | . | 5.3% | 302.2 / 10.5 | 95 | coding (4305/4446 nt) | PP_2212 | leucine‑rich repeat‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (40/50); new base . (2/3); total (42/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.13e-01 | |||||||||||
TTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAGGGGTGATTAGCGGC > NC_002947/2522948‑2523246 | tttCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAg < 1:470799/150‑1 (MQ=255) tCTGCGGGTTACGCACGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGc < 1:1643716/150‑1 (MQ=255) gCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCa > 1:1514709/1‑150 (MQ=255) ggTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCCTGCA‑GCTCaagc < 1:422570/150‑3 (MQ=255) ttACGAGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCCTGCA‑GCTCaagcgt < 2:1009304/150‑5 (MQ=255) gcgcgcgcAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGt < 2:1028457/150‑1 (MQ=255) gcgcgcAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCt < 1:149337/150‑1 (MQ=255) gcgcgcAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCt > 1:1787769/1‑150 (MQ=255) cgcgcAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCtt < 1:1439861/150‑1 (MQ=255) cgcgcAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCtt < 2:261182/150‑1 (MQ=255) cgcgcAGACCATCGAGGGCCTGACCGATAGCATGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCtt < 2:263637/150‑1 (MQ=255) gcgcAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTg < 2:812606/150‑1 (MQ=255) gcAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGgc > 1:440865/1‑150 (MQ=255) aGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGgcgc > 1:2044422/1‑150 (MQ=255) gACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTCCACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTCTCTTGGCGcc > 1:2092026/1‑150 (MQ=255) cATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCcggc > 1:1441604/1‑150 (MQ=255) cGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCggcggc < 1:2243876/150‑1 (MQ=255) gAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGcc < 2:2293234/150‑1 (MQ=255) ccTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGa < 2:360631/150‑1 (MQ=255) cTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGag < 2:900149/150‑1 (MQ=255) gACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGagca > 1:386073/1‑150 (MQ=255) ccGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGagcagc < 2:1348455/150‑1 (MQ=255) aTAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAAc < 2:386073/150‑1 (MQ=255) cTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGc > 2:1086303/1‑150 (MQ=255) cTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGc > 1:950294/1‑150 (MQ=255) cTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGATCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGc > 1:228653/1‑150 (MQ=255) aGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCgg < 2:440865/150‑1 (MQ=255) ccAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAAc < 1:516939/140‑1 (MQ=255) ccAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAAc > 2:516939/1‑140 (MQ=255) cAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTa < 2:2258845/150‑1 (MQ=255) gcgcgcGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACa < 2:2030574/150‑1 (MQ=255) gcgcgcGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACa > 2:813375/1‑150 (MQ=255) cgcgcgTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAg < 1:466623/150‑1 (MQ=255) gcgTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGaa < 2:1787769/150‑1 (MQ=255) gcgTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGaa < 2:178775/150‑1 (MQ=255) gTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAca > 2:2423480/1‑150 (MQ=255) cTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAcagca < 2:1374726/150‑1 (MQ=255) tGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAcagcag > 1:2373636/1‑150 (MQ=255) gcgcCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGa < 2:2373636/150‑1 (MQ=255) gcgcCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGa > 1:2138723/1‑150 (MQ=255) cgcCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGAc < 2:1441604/150‑1 (MQ=255) gcCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGAcc > 1:527635/1‑150 (MQ=255) ttACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGagcagc > 2:1847138/1‑116 (MQ=255) ttACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGagcagc < 1:1847138/116‑1 (MQ=255) aCCTGCGCCAGCAACATGCCCACATGTTATATGCTCTCAGTGCTGATTATCCTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGata < 2:622922/150‑1 (MQ=255) cTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCCTGCA‑GCTCaa > 2:1948270/1‑78 (MQ=255) cTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCCTGCA‑GCTCaa < 1:1948270/78‑1 (MQ=255) cTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATc > 1:717566/1‑150 (MQ=255) tGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCtt > 1:2331256/1‑88 (MQ=255) tGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCtt < 2:2331256/88‑1 (MQ=255) tGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCg > 1:284665/1‑150 (MQ=255) gcgcCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTCCAGGAACAGCAGGACCTCGATATCGa > 2:1761663/1‑150 (MQ=255) gcgcCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGa < 1:941879/150‑1 (MQ=255) cgcCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAg < 1:1348574/150‑1 (MQ=255) gcCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAgc > 2:999396/1‑150 (MQ=255) ccAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCACACGCTTGAG‑CTGCAGGCTCGACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAgcg > 2:1327852/1‑150 (MQ=255) cAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAgcgc > 1:561579/1‑150 (MQ=255) gCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCt > 2:1824311/1‑150 (MQ=255) aCATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAAATCAGGACCTCGATATCGAGCGCCTGGt < 1:1244447/150‑1 (MQ=255) cATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCCACTACGTCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTc < 1:1761663/150‑1 (MQ=255) ccAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTTTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAgg > 1:841047/1‑150 (MQ=255) ccAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAgg > 2:607138/1‑150 (MQ=255) cAACTGTTCGATGCCCTCAGGGCGGATTACACCCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAggg < 1:104786/150‑1 (MQ=255) cAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAggg < 1:921015/150‑1 (MQ=255) cAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAggg > 1:2247045/1‑150 (MQ=255) gTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCAc < 1:1914852/150‑1 (MQ=255) ttCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCAcc > 1:452429/1‑150 (MQ=255) cGATGCCCTCAGTGCGGATTCCACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCa < 2:2398839/150‑1 (MQ=255) cGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCa < 2:1667761/150‑1 (MQ=255) ccTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTa > 1:96899/1‑150 (MQ=255) ccTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTa < 1:949324/150‑1 (MQ=255) cTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTAc > 2:497394/1‑150 (MQ=255) cTCAGTGCGGATCACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTAc > 1:2114424/1‑150 (MQ=255) gTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGc < 1:999396/150‑1 (MQ=255) gTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGc < 1:1447536/150‑1 (MQ=255) tGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCa < 2:1386187/127‑1 (MQ=255) tGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCa > 1:1386187/1‑127 (MQ=255) tGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCt < 1:40148/147‑1 (MQ=255) tGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCt > 2:40148/1‑147 (MQ=255) tGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCg > 1:185736/1‑150 (MQ=255) gCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGt < 2:96899/150‑1 (MQ=255) gATCACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCa < 2:2114424/150‑1 (MQ=255) cTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAgc < 1:2423480/150‑1 (MQ=255) tCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCAcc > 2:2167196/1‑124 (MQ=255) tCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCAcc < 1:2167196/124‑1 (MQ=255) tCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAgcg > 2:393319/1‑150 (MQ=255) gcACGCTTGAG‑CTGCAGGCTCAACGCCCTGTCTTGGCGCCGGCGGCCTTCGAGCATCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCag > 1:894502/1‑150 (MQ=255) cGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAgg < 2:284665/150‑1 (MQ=255) gCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAggg > 2:2200562/1‑150 (MQ=255) ttGAGCCTGCA‑GCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCACGCAGAGGGGt > 2:662649/1‑150 (MQ=255) ttGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAGGGGt < 2:452429/150‑1 (MQ=255) ttGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAGGGGt < 1:1327852/150‑1 (MQ=255) tGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAGGGGTg < 2:527635/150‑1 (MQ=255) tGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAGGGGTg < 2:2044422/150‑1 (MQ=255) gAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGACATCGGTCTCTCATTGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAGGGGTGa < 2:2433572/150‑1 (MQ=255) cAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAGGGGTGATTAgag > 2:602798/1‑148 (MQ=255) ggCTCAACGTCCTGTTTTTGCGCCGGCGGCCTCCGAGCAGCAACTGCGCCGGCTACAGGAACAGCAGGGCCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAGGGGTGATTAgcggc < 2:456202/150‑1 (MQ=255) ggCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAGGGGTGATTAgcggc < 2:327806/150‑1 (MQ=255) | TTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAGGGGTGATTAGCGGC > NC_002947/2522948‑2523246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |