| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,466,886:1 | +A | 8.2% | intergenic (‑18/+106) | PP_3081 ← / ← PP_5560 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,466,886 | 1 | . | A | 8.2% | 367.7 / 27.7 | 98 | intergenic (‑18/+106) | PP_3081/PP_5560 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (44/46); new base A (4/4); total (48/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.49e-01 | |||||||||||
Only 100 of 103 total aligned reads displayed.
GTACCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTGGCTCCGG > NC_002947/3466738‑3467035 | gTACCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTATTAACCGGAACTTCATGCCGGGTCCTTGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTgc‑g > 1:45878/1‑150 (MQ=255) aCCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTgc‑ggc > 2:2319910/1‑150 (MQ=255) ccTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTgc‑ggcg < 1:901695/150‑1 (MQ=255) cTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGc‑ggcgg < 1:2319910/150‑1 (MQ=255) cGGGCAGGGTGTCGCAGCTCAGTGGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCC‑GCAGGCGGCCa < 1:1152444/150‑1 (MQ=255) gggCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCaa < 1:648405/150‑1 (MQ=255) gggCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCC‑GCAGGCGGCCaa > 2:1492986/1‑150 (MQ=255) gggCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCC‑GCAGGCGGCCaa < 1:1492986/150‑1 (MQ=255) aaGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCC‑GCAGGCGGCCaa < 1:1291068/146‑1 (MQ=255) aaGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCC‑GCAGGCGGCCaa > 2:1291068/2‑147 (MQ=255) aGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCt > 1:905955/1‑150 (MQ=255) gTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCCTCCGTGAAAGAGGCGGAAGAGACCGGTAACGCACCGGTGCCGCCTGC‑GGCGGCGAAAGccga > 2:23503/1‑147 (MQ=255) gTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCtgt > 2:1976669/1‑150 (MQ=255) gTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCtgt > 2:1584824/1‑150 (MQ=255) gTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCa < 2:1885636/150‑1 (MQ=255) tCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAg < 2:2195424/150‑1 (MQ=255) ccAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAggg > 1:430346/1‑150 (MQ=255) ccAGCTCAGTTGAGGGGTCCGCGCTTCACCGGCACCGCATGCCGGGTCCTGGCCGAACTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAggg > 1:54519/1‑150 (MQ=255) gCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGgcag < 1:1905171/150‑1 (MQ=255) gTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAag < 1:476773/150‑1 (MQ=255) gCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAagcag < 2:280207/150‑1 (MQ=255) cGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAagcagc < 2:394740/150‑1 (MQ=255) tCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACa > 1:832738/1‑150 (MQ=255) cGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCGTCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGc < 1:2115751/150‑1 (MQ=255) cGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGc < 2:758036/150‑1 (MQ=255) cGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGc > 2:752861/1‑150 (MQ=255) ctctTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCa < 1:1381657/150‑1 (MQ=255) tctTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAg > 2:1092561/1‑150 (MQ=255) ttCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAgtg > 2:1563837/1‑150 (MQ=255) ttCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGACGCCAGC‑TGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAgtg > 2:1244164/1‑150 (MQ=255) aCCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGTCAGCAAAGCAGCGAACAGCCAGTGTCt < 1:1244164/150‑1 (MQ=255) ccGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAg < 2:2381578/144‑1 (MQ=255) cGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGa > 2:581558/1‑150 (MQ=255) ggCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAg > 2:1732056/1‑150 (MQ=255) gCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAgg < 2:2160833/150‑1 (MQ=255) cACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGt < 2:2261713/150‑1 (MQ=255) cGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGACAGACAAGGAACTGAACAAATTCGTTGTTTGGCGGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCa > 1:2122696/1‑150 (MQ=255) gCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCAt > 1:357626/1‑150 (MQ=255) gCAGGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCAt < 2:1125265/150‑1 (MQ=255) tGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGt < 1:1976669/150‑1 (MQ=255) cGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAACAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCaa > 1:1203902/1‑150 (MQ=255) tCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAg < 1:1366648/134‑1 (MQ=255) tCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAg > 2:1366648/1‑134 (MQ=255) tCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCt > 1:104624/1‑150 (MQ=255) ccTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCtt < 1:1964512/150‑1 (MQ=255) tGGCCGACCTGTTGAAGGGAAAAGACGCCGCCATCAGGGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTgg < 2:1203902/150‑1 (MQ=255) gCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGGAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCa > 1:1080398/1‑150 (MQ=255) cGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAgg > 1:743407/1‑150 (MQ=255) cGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAgg > 2:2413537/1‑150 (MQ=255) gACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCTGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAgg < 1:2180012/149‑1 (MQ=255) gACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAgg > 2:2180012/1‑149 (MQ=255) aCCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGc < 2:2073741/150‑1 (MQ=255) gTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCa < 1:1092561/150‑1 (MQ=255) gTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCa > 2:2298013/1‑150 (MQ=255) gCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACgg > 2:1629760/1‑150 (MQ=255) aGGGCAATGCAGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGGGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTACATGGTCAATCCTTGGCAGGGCGTCACGGCt < 1:2330607/150‑1 (MQ=255) gggCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCa < 2:1194085/136‑1 (MQ=255) gggCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCa > 1:1194085/1‑136 (MQ=255) ggCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCa > 2:2428513/1‑150 (MQ=255) ggCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCCCa > 2:2427788/1‑150 (MQ=255) cAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGt < 1:2298013/150‑1 (MQ=255) aTGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAagca > 2:129159/1‑90 (MQ=255) aTGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAagca < 1:129159/90‑1 (MQ=255) tGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTa > 1:1753136/1‑150 (MQ=255) tGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTa < 1:1584824/150‑1 (MQ=255) gccATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCCGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAgg > 1:2348290/1‑150 (MQ=255) gccATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCGAgg > 1:585673/1‑150 (MQ=255) aTCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCt > 2:542150/1‑150 (MQ=255) cAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGc < 1:752861/150‑1 (MQ=255) cAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGc < 2:832738/150‑1 (MQ=255) tGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAg < 2:1521635/136‑1 (MQ=255) tGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAg > 1:1521635/1‑136 (MQ=255) tGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAg > 2:1067799/1‑141 (MQ=255) tGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAg < 1:1067799/141‑1 (MQ=255) gAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAagcagc > 2:485932/1‑75 (MQ=255) gAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAagcagc > 1:2339470/1‑75 (MQ=255) gAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAagcagc < 1:485932/75‑1 (MQ=255) gAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAagcagc < 2:2339470/75‑1 (MQ=255) gAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCa < 2:104624/150‑1 (MQ=255) aGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCg > 2:539768/1‑150 (MQ=255) gACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCgg < 2:54519/150‑1 (MQ=255) gAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTa > 1:1973222/1‑127 (MQ=255) gAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTa < 2:1973222/127‑1 (MQ=255) gAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTg < 1:1732056/150‑1 (MQ=255) gAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTg < 2:1818132/150‑1 (MQ=255) cTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTgg < 1:1563837/150‑1 (MQ=255) cGACATCGCGCGTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCGCGGCTCAg > 1:328035/1‑112 (MQ=255) cGACATCGCGCGTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCGCGGCTCAg < 2:328035/112‑1 (MQ=255) aCATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTgg > 2:1430965/1‑92 (MQ=255) aCATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTgg < 1:1430965/92‑1 (MQ=255) aTCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCACGGCCGAACAGAAGCAAAAAGCGGTTGGCTAGTTTGCATTCGCTGGTGTTCGGAGGGCGTCACGGGGTATTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCa < 2:269018/150‑1 (MQ=255) cgcgCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGt < 2:743407/150‑1 (MQ=255) agcgttGGCCGCC‑GCAGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTgg < 2:1221911/82‑1 (MQ=38) agcgttGGCCGCC‑GCAGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTgg > 1:1221911/5‑86 (MQ=38) cgttGGCCGCC‑GCAGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCt > 2:2247511/3‑150 (MQ=255) tGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCg > 1:1400626/1‑150 (MQ=255) cgccTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGt > 2:183627/1‑139 (MQ=255) cgccTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGt < 1:183627/139‑1 (MQ=255) cgccTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCCAACATGCATTGGCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTgg > 2:2158572/1‑150 (MQ=255) c‑ggcggCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTGGCTCCgg < 1:581558/150‑1 (MQ=255) | GTACCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGC‑GGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTGGCTCCGG > NC_002947/3466738‑3467035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |