| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,867,789:1 | +C | 6.1% | intergenic (‑28/+24) | thyA ← / ← lgt | thymidylate synthase/prolipoprotein diacylglyceryl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,867,789 | 1 | . | C | 6.1% | 402.3 / 19.1 | 99 | intergenic (‑28/+24) | thyA/lgt | thymidylate synthase/prolipoprotein diacylglyceryl transferase |
| Reads supporting (aligned to +/- strand): ref base . (48/45); new base C (3/3); total (51/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.86e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
CCCTTCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGTT > NC_002947/5867640‑5867937 | cccTTCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAgggg < 1:700076/150‑1 (MQ=255) ccTTCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAgggg‑g < 2:1943742/150‑1 (MQ=255) tCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATc < 1:442777/150‑1 (MQ=255) gCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCTCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGcc < 1:978244/150‑1 (MQ=255) gAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCg > 1:1893539/1‑150 (MQ=255) gAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGCCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCg > 2:1487050/1‑150 (MQ=255) aCGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCGCTCACGGTGTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTgg < 1:1487050/150‑1 (MQ=255) aCGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGCCGttt < 2:1942476/150‑3 (MQ=255) aCGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTgg < 2:1893539/150‑1 (MQ=255) aCGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTgg < 2:1479625/150‑1 (MQ=255) gcagcaTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGa > 1:2211643/1‑150 (MQ=255) gcaTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTa > 2:676848/1‑150 (MQ=255) aTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAAt < 1:1981685/150‑1 (MQ=255) gcCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGc < 1:676848/150‑1 (MQ=255) cgccAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCGTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCggg < 1:2344107/147‑1 (MQ=255) cGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTACCTACAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCggg < 1:725272/150‑1 (MQ=255) gCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGtt < 2:1807913/150‑1 (MQ=255) cTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTTTTTTATGGCTTACCTGTAGCAACAACGGCAGGGG‑GATCGCCCCTGCCGTGTGATTAATCAGGCGGGTTTCGcc < 2:1614841/150‑1 (MQ=255) cTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGcc < 1:1431866/150‑1 (MQ=255) tGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCg > 2:274683/1‑150 (MQ=255) gATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGa > 2:1221163/1‑128 (MQ=255) gATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGa < 1:1221163/128‑1 (MQ=255) aTGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTa < 1:990414/150‑1 (MQ=255) tGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAg < 2:210862/150‑1 (MQ=255) tGGTGCGGATGCCGGTGCAGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAg < 2:2197526/150‑1 (MQ=255) tGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCCGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCt > 2:202229/1‑150 (MQ=255) tGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCt > 1:1498685/1‑150 (MQ=255) gCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCtt > 2:1490902/1‑150 (MQ=255) gCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGAtt < 1:274683/150‑1 (MQ=255) cgatGCGGTTTGCCGGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTAAAAAAAGAAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATtat < 2:167774/147‑1 (MQ=255) gTGCGGTTTCCCTGCAACGTGCCGATATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTa > 2:778041/1‑135 (MQ=255) gTGCGGTTTCCCTGCAACGTGCCGATATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTa < 1:778041/135‑1 (MQ=255) gCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGc < 1:699888/150‑1 (MQ=255) gTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCg > 2:1791445/1‑128 (MQ=255) gTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCg < 1:1791445/128‑1 (MQ=255) ttCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCccacc < 1:1366708/150‑1 (MQ=255) cTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGAt > 1:1177391/1‑150 (MQ=255) cTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGAt < 2:2119050/150‑1 (MQ=255) cTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCACAGCAGAt > 2:183843/1‑150 (MQ=255) cTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGATTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGAt > 1:793457/1‑150 (MQ=255) tGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGcc > 2:81181/1‑94 (MQ=255) tGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGcc < 1:81181/94‑1 (MQ=255) tGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGa > 1:485637/1‑132 (MQ=255) tGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGa < 2:485637/132‑1 (MQ=255) tGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATc > 1:2248231/1‑150 (MQ=255) tGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATc > 1:496619/1‑150 (MQ=255) cAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAAt > 1:951518/1‑103 (MQ=255) cAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCaa > 2:807645/1‑150 (MQ=255) aaCGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAg > 2:275667/1‑150 (MQ=255) cGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGAc < 1:429822/150‑1 (MQ=255) cGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGAc < 1:807645/150‑1 (MQ=255) cGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAg > 2:132305/1‑148 (MQ=255) cGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAg < 1:132305/148‑1 (MQ=255) tATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCAc > 2:712908/1‑150 (MQ=255) cAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCACTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAATACGAGGCCACCGa < 2:1726782/150‑1 (MQ=255) aaTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGAc > 2:1151610/1‑150 (MQ=255) aTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGc > 1:1033279/1‑112 (MQ=255) aTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGc < 2:1033279/112‑1 (MQ=255) cGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTatca > 2:1795801/1‑150 (MQ=255) gTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATAAAGACGAGGCCACCGACTatcat > 2:1956929/1‑150 (MQ=255) cgcgGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCg < 2:2211643/150‑1 (MQ=255) ggACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGaa < 2:2248231/150‑1 (MQ=255) gTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAg > 2:1792588/1‑150 (MQ=255) gTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAg > 1:586149/1‑150 (MQ=255) aGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCccac > 2:2382678/1‑105 (MQ=255) aTACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGca < 2:1514401/141‑1 (MQ=255) aTACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGca > 1:1514401/1‑141 (MQ=255) aTACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTg > 2:343562/1‑150 (MQ=255) ttCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga < 2:1177391/150‑1 (MQ=255) cATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagt > 2:2084866/1‑150 (MQ=255) aTGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagtg > 2:1470777/1‑150 (MQ=255) tGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagtga > 1:370954/1‑150 (MQ=255) tGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTggagtga > 1:560033/1‑150 (MQ=255) ttACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagcca > 1:1951226/1‑150 (MQ=255) ttACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCAGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagcca > 1:322769/1‑150 (MQ=255) aCCTGTAGCAAAAACGGCAGGGT‑GATCGCACCTGCAGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagccagc < 2:786757/150‑1 (MQ=255) aCCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagccagc < 1:275667/150‑1 (MQ=255) ccTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGCTTCGCCGTAGGCTTGCGATTATAAGCACACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagccagcc < 2:2213666/150‑1 (MQ=255) cTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCg > 1:2255774/1‑150 (MQ=255) tGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGa > 1:2172525/1‑96 (MQ=255) tGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGa < 2:2172525/96‑1 (MQ=255) tAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagc > 1:2155253/1‑141 (MQ=255) tAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagc < 2:2155253/141‑1 (MQ=255) tAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAAc > 2:1655772/1‑150 (MQ=255) cAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCACACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAAcgcg > 2:1776609/1‑150 (MQ=255) aaaaaCGACAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAAt > 2:2334717/1‑112 (MQ=255) aaaaaCGACAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAAt < 1:2334717/112‑1 (MQ=255) aaaaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGNGAt < 2:1498685/150‑1 (MQ=255) ccaCGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga > 1:868054/3‑129 (MQ=255) ccaCGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga < 2:868054/127‑1 (MQ=255) gcGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTTGGTGAGCCAGCCGAACGCGATGTa > 2:1947608/2‑150 (MQ=255) aCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTa > 1:1644879/1‑150 (MQ=255) ggCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAAc > 2:2052303/1‑150 (MQ=255) gCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagtga < 1:298604/128‑1 (MQ=255) gCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagtga > 2:298604/1‑128 (MQ=255) gCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAAcc > 2:1510086/1‑150 (MQ=255) aGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAg > 1:201904/1‑109 (MQ=255) aGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGa < 1:202229/150‑1 (MQ=255) gggg‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAg < 1:1510086/150‑1 (MQ=255) gg‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGtt < 1:1795801/150‑1 (MQ=255) | CCCTTCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGTT > NC_002947/5867640‑5867937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |