| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,130,143:1 | +T | 5.4% | intergenic (‑192/+112) | gcvH‑I ← / ← PP_0990 | glycine cleavage system protein H/DoxX family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,130,143 | 1 | . | T | 5.4% | 371.1 / 14.4 | 93 | intergenic (‑192/+112) | gcvH‑I/PP_0990 | glycine cleavage system protein H/DoxX family protein |
| Reads supporting (aligned to +/- strand): ref base . (41/47); new base T (2/3); total (43/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.09e-01 | |||||||||||
CGCGCTCTTAGGGTAGGATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGC > NC_002947/1129994‑1130290 | cgcgCTCTTAGGGTAGGATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGa < 1:2212694/150‑1 (MQ=255)cgcgCTCTTAGGGTAGGATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGa < 2:1028336/150‑1 (MQ=255) gcTCTTAGGGTAGGATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCa > 1:177997/1‑150 (MQ=255) ctctTAGGGTAGGATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCAt < 2:1290344/150‑1 (MQ=255) ctctTAGGGTAGGATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCAt > 2:1965825/1‑150 (MQ=255) ctTAGGGTAGGATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCa > 2:1858901/1‑150 (MQ=255) tAGGGTAGGATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCaaa < 2:881029/150‑1 (MQ=255) ggTAGGATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCGTCAAAccc > 1:2128738/1‑150 (MQ=255) gTAGGATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGGA‑ACTAAGCGACTGGTTTGTGGAATGATATCGTTACAGGAGCCTAGGAGAGGAAAAGGGTTTGA‑GCATCAAACCCt > 1:1615382/1‑150 (MQ=255) tAGGATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGATGC‑TCAAACCCtt < 2:252794/150‑1 (MQ=255) tAGGATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCtt < 1:986864/150‑1 (MQ=255) aGGATTCCTTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGATGC‑TCAAACCCttt < 1:1807711/150‑2 (MQ=255) aGGATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATCGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTtg < 2:1299505/150‑1 (MQ=255) ggATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTtgt < 1:2032546/150‑1 (MQ=255) ggATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTtgt < 1:298954/150‑1 (MQ=255) gATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTtgtg > 1:909247/1‑150 (MQ=255) aTTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGc > 1:1098826/1‑150 (MQ=255) ttCCCTTAGCAATACTGCGGCCAACCTTTAAAATGTCTGATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCa < 2:1098826/150‑1 (MQ=255) ttCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCa > 2:167314/1‑150 (MQ=255) tCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCAc < 1:167314/150‑1 (MQ=255) cTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTTCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGa > 2:439812/1‑150 (MQ=255) ttAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGAc < 2:1485236/150‑1 (MQ=255) aataatGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCga > 2:786223/1‑150 (MQ=255) gCCAACCTCTAAAATTTCTTCTTTATTACCAGATTAAGTAAATTTACTTAGTAGGTTGTTTTTA‑TGTGTGTATTGATATCTTTACAGGTGCCTCTGAGAGGAAAAGGGCTTGA‑GCATCAAACCCTTGTGCAGCGACGGCGAGGAGGCtgt > 2:1843533/1‑150 (MQ=255) gCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCtgt < 2:909247/150‑1 (MQ=255) ccAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCtgtg < 1:451409/150‑1 (MQ=255) cAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTgtgt < 1:786223/150‑1 (MQ=255) cAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTgtgt > 2:75955/1‑150 (MQ=255) cAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTgtgt > 2:1961131/1‑150 (MQ=255) ccTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATc < 1:224695/150‑1 (MQ=255) tataAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGt < 1:1961131/150‑1 (MQ=255) ataAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCt > 2:1556473/1‑117 (MQ=255) ataAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCt < 1:1556473/117‑1 (MQ=255) aaaaTTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGtttt < 2:1532587/150‑1 (MQ=255) aaTTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGAAAAAAACCACAA‑TTATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCg > 2:1023985/1‑150 (MQ=255) ttatttatCAATAGATTACGTAAATTTACAGAG‑AAGACGAATTTATTGTTGGGAATGATCTAGTTACAGGTGAATCTGGGGGACGACCAGATAAG‑GCTTCAAACCCTTGTGCACCGACGGCGAGGAGGCAGTGTAACTGTTTCTCTacga > 1:2388880/1‑150 (MQ=255) atCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGc > 2:394678/1‑150 (MQ=255) aTAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGaaa > 1:656897/1‑150 (MQ=255) aTTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGa > 1:793579/1‑150 (MQ=255) ttACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGAt < 1:1965825/150‑1 (MQ=255) gTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCa > 2:907193/1‑79 (MQ=255) gTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCa < 1:907193/79‑1 (MQ=255) gTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACAt > 2:977582/1‑150 (MQ=255) gTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACAt > 1:865560/1‑150 (MQ=255) aTTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATgtgg < 1:1032650/150‑1 (MQ=255) ggAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTg > 2:2200666/1‑150 (MQ=255) gag‑aAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGc < 2:27529/99‑1 (MQ=255) gag‑aAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGc > 1:27529/1‑99 (MQ=255) ccGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGc < 1:1674371/150‑1 (MQ=255) ccGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGc > 1:1388323/1‑150 (MQ=255) ccGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGc > 1:2330108/1‑150 (MQ=255) tatttattGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAg > 2:1291389/1‑150 (MQ=255) tttattGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAggc < 1:515658/150‑2 (MQ=255) tttattGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGt < 2:656897/150‑1 (MQ=255) attGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGcc < 2:1388323/150‑1 (MQ=255) ttGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCtt < 1:233057/63‑1 (MQ=255) ttGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCtt > 2:233057/1‑63 (MQ=255) ttGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCa > 2:1195352/1‑150 (MQ=255) gtgGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATgg < 1:2229203/150‑1 (MQ=255) ggAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCt < 2:1175393/127‑1 (MQ=255) ggAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCt > 1:1175393/1‑127 (MQ=255) tGATATCGTTACAGGTGCCTCTGAGAGGAAACGGCTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCg < 2:1247150/150‑1 (MQ=255) tGATATCGTTACAGGTGCCTCTGAGAGGAAACGGATTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCg < 2:1246720/150‑1 (MQ=255) tGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCg < 1:2085914/150‑1 (MQ=255) tGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCg < 1:75955/150‑1 (MQ=255) tGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCg < 2:1615382/150‑1 (MQ=255) tGATATCGTTACAGGTGCCTCTGAGACGAAAAGGGTTTGA‑GCATCAAACCCTCGTGATGGTACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCg < 1:1843533/150‑1 (MQ=255) atatCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGt > 2:410071/1‑150 (MQ=255) atatCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGt < 1:977582/150‑1 (MQ=255) gTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGaaaa > 1:2136693/1‑99 (MQ=255) gTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGaaaa < 2:2136693/99‑1 (MQ=255) gTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCAtct > 2:267831/1‑150 (MQ=255) ttACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCAtctc > 1:1911345/1‑150 (MQ=255) aGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAg > 1:1511385/1‑122 (MQ=255) aGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAg < 2:1511385/122‑1 (MQ=255) gTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTc > 2:970509/1‑150 (MQ=255) gTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGACGTATCAATGGACTTCGGTCATCTCACTTTc > 1:602565/1‑150 (MQ=255) ctGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAga < 1:267831/150‑1 (MQ=255) ctGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAga < 2:177997/150‑1 (MQ=255) gAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCa < 1:1390899/150‑1 (MQ=255) acaaGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCAc < 2:83721/130‑1 (MQ=255) acaaGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCAc > 1:83721/3‑132 (MQ=255) aaaaGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAg > 1:904609/1‑150 (MQ=255) aaaaGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAg < 1:1291389/150‑1 (MQ=255) aaaGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGc < 2:2388880/150‑1 (MQ=255) aaaGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGc < 1:394678/150‑1 (MQ=255) aaaGGGTTTGA‑GCACCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCGAGc > 1:1366331/1‑150 (MQ=255) aaGGGTTTGATGC‑TCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGcc > 1:1949908/1‑116 (MQ=255) aaGGGTTTGATGC‑TCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGcc < 2:1949908/116‑1 (MQ=255) aaGGGTTTGATGC‑TCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCg > 2:1932137/1‑150 (MQ=255) gTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGTTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGaaaa < 1:21173/150‑1 (MQ=255) tttGA‑GCATCAAGCCCTTGTGCACCGACGGCGCGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAAc < 2:859792/150‑1 (MQ=255) tGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCg > 2:70579/1‑46 (MQ=255) tGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCg < 1:70579/46‑1 (MQ=255) tGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGCCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAAcgc < 2:793579/150‑1 (MQ=255) | CGCGCTCTTAGGGTAGGATTCCCTTAGCAATAATGCGGCCAACCTATAAAATTTCTTATTTATCAATAGATTACGTAAATTTACGGAG‑AAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGC > NC_002947/1129994‑1130290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |