New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 23293797 (1.040)6 (0.070) 5/234 NT 5.8% coding (1036/1911 nt) PP_0180 cytochrome c family protein
?NC_002947 = 232944 104 (1.190)coding (1043/1911 nt) PP_0180 cytochrome c family protein

AGGCGACCACGATCAGGCCTATGACCTGTCGGTGGCGGCCTACCTGGAAGGTTTCGAGCTGGTGGAAAGCTCGCTGGACAACATCGATACCCAGGCGCGCAAGGACACCGAGAAATCGCTGATGGCCTACCGTCAGTCCCTGCAGGACGGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/232783‑232937
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgcTCCACGG‑GCAGGCCGTCCTGCAGGGACTGACGGTAGGCCATCAGCGATTTCTCGGTGTCCTTGCGCGCCTGGGTATCGATGTTGTCCAGCGAGCTTTCCACCAGCTCGAAACCTTCCAGGTAGGCCGCCACCGACAGGTCATAGGCC  <  NC_002947/232944‑232798
                                                                                                                                                                                                                                                                                                               
AGGCGACCACGATCAGGCCTATGACCTGTCGGTGGCGGCCTACCTGGAAGGTTTCGAGCTGGTGGAAAGCTCGCTGGACAACATCGATACCCAGGCGCGCAAGGACACCGAGAAATCGCTGATGGCCTACCGTCAGTCCCTGCAGGACGG                                                                                                                                                           >  1:582153/1‑150
    GACCACGATCAGGCCTATGACCTGTCGGTGGCGGCCTACCTGGAAGGTTTCGAGCTGGTGGAAAGCTCGCTGGACAACATCGATACCCAGGCGCGCAAGGACACCGAGAAATCGCTGATGGCCTACCGTCAGTCCCTGCAGGACGGCCTG                                                                                                                                                       >  2:442881/1‑150
                  CTATGACCTGTCGGTGGCGGCCTACCTGGAAGGTTTCGAGCTGGTGGAAAGCTCGCTGGACAACATCGATACCCAGGCGCGCAAGGACACCGAGAAATCGCTGATGGCCTACCGTCAGTCCCTGCAGGACGGCCTGCTCCACGG‑GCAGGC                                                                                                                                        <  2:582153/150‑1
                    ATGACCTGTCGGTGGCGGCCTACCTGGAAGGTTTCGAGCTGGTGGAAAGCTCGCTGGACAACATCGATACCCAGGCGCGCAAGGACACCGAGAAATCGCTGATGGCCTACCGTCAGTCCCTGCAGGACGGCCTGCTCCACGG‑GCAGGCCG                                                                                                                                      <  1:320317/150‑1
                                    GGCCTACCTGGAAGGTTTCGAGCTGGTGGAAAGCTCGCTGGACAACATCGATACCCAGGCGCGCAAGGACACCGAGAAATCGCTGATGGCCTACCGTCAGTCCCTGCAGGAC                                                                                                                                                             >  1:249585/1‑112
                                    GGCCTACCTGGAAGGTTTCGAGCTGGTGGAAAGCTCGCTGGACAACATCGATACCCAGGCGCGCAAGGACACCGAGAAATCGCTGATGGCCTACCGTCAGTCCCTGCAGGAC                                                                                                                                                             <  2:249585/112‑1
                                                                                                          ACCGAGAAATCGCTGATGGCCTACCGTCAGTCCCTGCAGGACGGCCTGC                                                                                                                                                      <  1:2334588/49‑1
                                                                                                          ACCGAGAAATCGCTGATGGCCTACCGTCAGTCCCTGCAGGACGGCCTGC                                                                                                                                                      >  2:2334588/1‑49
                                                                                                                                           CTGCAGGACGGCCTGCCCGTGGA‑GCAGGCCGTCCTGCAGGGACTGACGGTAGGCCATCAGCGATTTCTCGGTGTCCTTGCGCGCCTGGGTATCGAT                                                                     <  1:1376527/96‑1
                                                                                                                                           CTGCAGGACGGCCTGC‑CCGTGGAGCAGGCCGTCCTGCAGGGACTGACGGTAGGCCATCAGCGATTTCTCGGTGTCCTTGCGCGCCTGGGTATCGATGTTGTCCAGC                                                           <  1:2225513/106‑1
                                                                                                                                           CTGCAGGACGGCCTGC‑CCGTGGAGCAGGCCGTCCTGCAGGGACTGACGGTAGGCCATCAGCGATTTCTCGGTGTCCTTGCGCGCCTGGGTATCGATGTTGTCCAGC                                                           >  2:2225513/1‑106
                                                                                                                                           CTGCAGGACGGCCTGC‑CCGTGGAGCAGGCCGTCCTGCAGGGACTGACGGTAGGCCATCAGCGATTTCTCGGTGTCCTTGCGCGCCTGGGTATCGAT                                                                     >  2:1376527/1‑96
                                                                                                                                                     GCCTGGTCCAGGG‑GCTGGACGGCCTGCTGGGACGGACGGTAGACCAGCAGCGTTTTCTCGCCGTCCTTCCGCGCCTGGGTATCGATTTTGTCCAGCGAGCTTTCCACCAGCTCGAAACCTTCCAGGTAGGCCGCCACCGACAGGTCATgg     <  2:1002351/150‑3
                                                                                                                                                      CCTGCTCCACGG‑GCAGGCCGTCCTGCAGGGACTGACGGTAGGCCATCAGCGATTTCTCGGTGTCCTTGCGCGCCTGGGTATCGATGTTGTCCAGCGAGCTTTCCACCAGCTCGAAACCTTCCAGGTAGGCCGCCACCGACAGGTCATAGG    >  1:1914650/1‑150
                                                                                                                                                       CTGCTCCACGG‑GCAGGCCGTCCTGCAGGGACTGACGGTAGGCCATCAGCGATTTCTCGGTGTCCTTGCGCGCCTGGGTATCGATGTTGTCCAGCGAGCTTTCCACCAGCTCGAAACCTTCCCGATAGGCCGCCACCGACAGGTCATAGGC   <  1:1775619/150‑1
                                                                                                                                                       CTGCTCCACGG‑GCAGGCCGTCCTGCAGGGACTGACGGTAGGCCATCAGCGATTTCTCGGTGTCCTTGCGCGCCTGGGTATCGATGTTGTCCAGCGAGCTTTCCACCAGCTCGAAACCTTCCAGGTAGGCCGCCACCGACAGGTCATAGGC   >  2:620429/1‑150
                                                                                                                                                        TGCTCCACGG‑GCAGGCCGTCCTGCAGGGACTGACGGTAGGCCATCAGCGATTTCTCGGTGTCCTTGCGCGCCTGGGTATCGATGTTGTCCAGCGAGCTTTCCACCAGCTCGAAACCTTCCAGGTAGGCCGCCACCGACAGGTCATAGGCC  >  1:805216/1‑150
                                                                                                                                                                                                                                                                                                               
AGGCGACCACGATCAGGCCTATGACCTGTCGGTGGCGGCCTACCTGGAAGGTTTCGAGCTGGTGGAAAGCTCGCTGGACAACATCGATACCCAGGCGCGCAAGGACACCGAGAAATCGCTGATGGCCTACCGTCAGTCCCTGCAGGACGGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/232783‑232937
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgcTCCACGG‑GCAGGCCGTCCTGCAGGGACTGACGGTAGGCCATCAGCGATTTCTCGGTGTCCTTGCGCGCCTGGGTATCGATGTTGTCCAGCGAGCTTTCCACCAGCTCGAAACCTTCCAGGTAGGCCGCCACCGACAGGTCATAGGCC  <  NC_002947/232944‑232798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.