| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 359665 | 101 (1.080) | 21 (0.240) | 12/234 | NT | 19.6% | intergenic (+22/+98) | gbdR/PP_0299 | AraC family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 359732 | 78 (0.890) | intergenic (+89/+31) | gbdR/PP_0299 | AraC family transcriptional regulator/hypothetical protein | |||||
GTAGGCTCCAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/359509‑359665‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcggAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGCCGCCATCGG < NC_002947/359732‑359584 GTAGGCTCCAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTC > 1:1965918/1‑150 GCTCCAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCG > 2:1438605/1‑150 TCCAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCG > 2:820982/1‑150 TCCAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCG > 1:991897/1‑150 TCCAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGGCGACATTTGCCAGGGTAAGGCTCTGACACCGCGCCCGCCTCTTCGCG > 1:1074354/1‑150 CCAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG > 2:544462/1‑150 CCAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG < 1:874807/150‑1 GTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCG > 1:1101095/1‑132 GTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCG < 2:1101095/132‑1 CATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATC > 2:1735619/1‑150 CCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAA < 1:1735619/150‑1 CCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGATCTGACTCCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGAC < 2:1373715/150‑1 ACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGG < 1:541402/150‑1 CAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTGAGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGG < 1:2361327/150‑1 cgggaaGATGGCTGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGT < 2:1995744/144‑1 GGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTTCCAGTGTAAGGCTCTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGA < 1:1837161/150‑1 CCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGC < 2:79986/150‑1 CCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGC < 2:1950405/150‑1 TGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCT < 2:742147/120‑1 TGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCT > 1:742147/1‑120 CCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGAC < 2:1985739/113‑1 CCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGAC > 1:1985739/1‑113 GACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGC > 2:651700/1‑84 GACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGC < 1:651700/84‑1 AGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCT > 1:1644107/1‑82 AGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCT < 2:1643789/82‑1 AGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCT < 2:1644107/82‑1 AGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCT > 1:1643789/1‑82 GCTCTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCC > 2:1490849/1‑98 GCTCTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCC < 1:1490849/98‑1 CTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGCCG > 1:1667753/1‑150 TTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGCCGC > 1:918999/1‑150 TTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGG > 1:427866/1‑69 TTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGG < 2:427866/69‑1 TTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGCGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGCCGC > 2:1483085/1‑150 GCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAACAGGCCGGCGCCGTGTCAGAGCCCTACCCTGGCAAAGGCCCACTCATTGCGCGCCTGGCTCAGGGCCGCCAT < 1:1750239/150‑1 GCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCACGCGAAGAGGCCGGCGCGGTGTCAGAGC < 2:1696274/100‑1 GCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCACGCGAAGAGGCCGGCGCGGTGTCAGAGC > 1:1696274/1‑100 GCGGAACAAGCCCGCCCCCACAGAGCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGCCGCCAT < 1:347054/150‑1 GGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGCCGCCATCG < 2:2220098/150‑1 GAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGCCGCCATCGG > 1:2280058/1‑150 GTAGGCTCCAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/359509‑359665‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcggAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGCCGCCATCGG < NC_002947/359732‑359584 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |