| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 380836 = | 45 (0.480) | 9 (0.120) | 8/204 | NT | 22.9% | intergenic (+23/+86) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 380916 = | 24 (0.320) | intergenic (+103/+6) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer | |||||
GCATCAGACCAGCGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/381003‑380836‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgtgcccgcgaCTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCAGGTTGCGGTCCACTTC > NC_002947/380916‑381062 GCATCAGACCAGCGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGG < 1:334527/150‑1GCATCAGACCAGCGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGG < 1:1925601/150‑1 ATCAGACCAGCGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGA < 2:379427/150‑1 AGACCAGCGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCG > 2:1545027/1‑150 ACCAGCGCGGCGAGTGCCGAGCTGTCGCGCCTGGCAGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGG < 2:1429129/150‑1 CCAGCGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGC < 1:955684/150‑1 CGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGC < 2:893353/150‑1 CGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGC < 1:77125/150‑1 GCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGG < 2:1130088/137‑1 GCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGG > 1:1130088/1‑137 AGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCACGCCCGCtcc < 1:2441442/150‑4 CCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGG > 2:679315/1‑127 CCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGG < 1:679315/127‑1 CGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCa > 2:482858/1‑134 CGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCa < 1:482858/135‑2 TCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGG > 1:26547/1‑125 TCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGG < 2:26547/125‑1 GGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGC > 1:2116467/1‑120 GGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGC < 2:2116467/120‑1 GGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGC < 2:2117149/120‑1 GGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGC > 1:2117149/1‑120 GTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGG < 1:725795/107‑1 GTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGG > 2:725795/1‑107 CTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTTCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGT > 1:1871886/1‑99 CTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTTCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGT < 2:1871886/99‑1 TGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGG < 2:2162694/102‑1 TGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGG > 1:2162694/1‑102 GTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTG < 1:1140465/88‑1 GTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTG > 2:1140465/1‑88 CTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGT > 1:443265/1‑70 CTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGT < 2:443265/70‑1 CCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTAC > 2:2428389/1‑113 CCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTAC < 1:2428389/113‑1 CCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGC > 2:2225258/1‑150 CCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGA < 2:1104101/119‑1 CCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGA > 1:1104101/1‑119 ACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGAT < 1:64583/146‑1 ACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGAT > 2:64583/1‑146 CAATGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCC > 2:402257/1‑150 CGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCAC < 1:402257/150‑1 cctgGTGGGAGCGGGCGTGCCCGCCACTGCTGCTCGGTGCGTGACCGGGCCACCAGGCCATTGAGGGCTACCGCCGGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGCTGATG > 2:364460/5‑150 TGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCACGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCAC > 2:1772127/1‑150 GGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACC > 1:1008556/1‑150 GGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACC > 2:517875/1‑150 GGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGC < 1:2281582/96‑1 GGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGC > 2:2281582/1‑96 GAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTA < 1:2269486/115‑1 GAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTA > 2:2269486/1‑115 GCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGAATGCGCTCTGCACCGACAGGTCGTTGATGTTCACCAGGT > 1:1946811/1‑150 GCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGATGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCAGGTTGCG > 1:1119529/1‑150 CCGGGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCGGGTTGCGGTCCAC > 2:518723/1‑150 CCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCAGGTTGCGGTCCAC > 2:240599/1‑150 CCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCAGGTTGCGGTCCAC > 1:1138841/1‑150 CCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCGGCACGAACGGGGCGTTGAGGTTCACCAGGTTGCGGTCCAC > 2:241515/1‑150 CGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCAGGTTGCGGTCCACTTC < 1:517875/150‑1 GCATCAGACCAGCGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/381003‑380836‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgtgcccgcgaCTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCAGGTTGCGGTCCACTTC > NC_002947/380916‑381062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |