| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 391267 | 95 (1.020) | 7 (0.080) | 6/236 | NT | 7.1% | coding (1538/3015 nt) | soxA | sarcosine oxidase subunit alpha |
| ? | NC_002947 | = 391277 | 94 (1.070) | coding (1548/3015 nt) | soxA | sarcosine oxidase subunit alpha | |||||
TATCAACGGCGTGTATGCCTTGGGCGATGTCATTGCCGATGGCTTCGAAGGCGGCGTCCGCGCAGCCACCGAGGCCGGTTTCAAGGCCACTGTCGGCACCCTGCCAAAAACAGTGGCGCGCAAGGAAGAGGCCACTGTGGCACTGTTCCTGGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/391112‑391267‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgccTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTTTGGCAGGGTGCCGACAGTGGCCTTGAAACCGGCCTCGGTGGCTGCGCGGACGCCGCCTTCGAAGCCATCGGCAATGACATCGCCCAAGG < NC_002947/391277‑391129 TATCAACGGCGTGTATGCCTTGGGCGATGTCATTGCCGATGGCTTCGAAGGCGGCGTCCGCGCAGCCACCGAGGCCGGTTTCAAGGCCACTGTCGGCACCCTGCCAAAAACAGTGGCGCGCAAGGAAGAGGCCACTGTGGCACTGTTCCT < 2:900307/150‑1 ATCAACGGCGTGTATGCCTTGGGCGATGTCATTGCCGATGGCTTCGAAGGCGGCGTCCGCGCAGCCACCGAGGCCGGTTTCAAGGCCACTGTCGGCACCCTGCCAAAAACAGTGGCGCGCAAGGAAGAGGCCACTGTGGCACTGTTCCTG > 1:140288/1‑150 ACGGCGTGTATGCCTTGGGCGATGTCATTGCCGATGGCTTCGAAGGCGGCGTCCGCGCAGCCACCGAGGCCGGTTTCAAGGCCACTGTCGGCACCCTGCCAAAAACAGTGGCGCGCAAGGAAGAGGCCACTGTGGCACTGTTCCTGGTGC > 2:1299645/1‑150 CGGCGTGTATGCCTTGGGCGATGTCATTGCCGATGGCTTCGAAGGCGGCGTCCGCGCAGCCACCGAGGCCGGTTTCAAGGCCACTGTCGGCACCCTGCCAACAACAGTAGCGAGCAAGGAAGTTTCCACTTGGGCACTTTTCCTGGTGCC > 2:1453970/1‑150 CGGCGTGTATGCCTTGGGCGATGTCATTGCCGATGGCTTCGAAGGCGGCGTCCGCGCAGCCACCGAGGCCGGTTTCAAGGCCACTGTCGGCACCCTGCCAAAAACAGTGGCGCGCAAGGAAGAGGCCACTGTGGCACTGTTCCTGGTGCC < 1:829350/150‑1 CGATGTCATTGCCGATGGCTTCGAAGGCGGCGTCCGCGCAGCCACCGAGGCCGGTTTCAAGGCCACTGTCGGCACCCTGCCAAAAACAGTGGCGCGCAAGGAAGAGGCCACTGTGGCACTGTTCCTGGTGCCTTTGTCGTGCGGCACCAG < 1:1850192/150‑1 CGGTTTCAAGGCCACTGTCGGCACCCTGCCAAAAACAGTGGCGCGCAAGGAAGAGGCCACTGTGGCACTGTTCCTGGTGCCTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTG > 2:1792421/1‑115 CGGTTTCAAGGCCACTGTCGGCACCCTGCCAAAAACAGTGGCGCGCAAGGAAGAGGCCACTGTGGCACTGTTCCTGGTGCCTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTG < 1:1792421/115‑1 AAGGCCACTGTCGGCACCCTGCCAAAAACAGTGGCGCGCAAGGAAGAGGCCACTGTGGCACTGTTCCTGGTGCCTTTGTCGTGCGGCACCAGG > 1:2166488/1‑93 AAGGCCACTGTCGGCACCCTGCCAAAAACAGTGGCGCGCAAGGAAGAGGCCACTGTGGCACTGTTCCTGGTGCCTTTGTCGTGCGGCACCAGG < 2:2166488/93‑1 GAGGCCACTGTGGCACTGTTCCTGGTGCCTTTGTCGTGCGGCACCAG < 1:228763/47‑1 GAGGCCACTGTGGCACTGTTCCTGGTGCCTTTGTCGTGCGGCACCAG > 2:228763/1‑47 GTGCCTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTTTGGCAGGGTGCCGACCGTGGCCTTGAAACCGGCCTCGGTGGCTGCGCGGACGCCGCCTTCGAAGCCATCGGCAATGACATCGCCC > 2:276639/1‑150 GTGCCTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTT < 1:1458527/65‑1 GTGCCTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTT > 2:1458527/1‑65 TGCCTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTTTGGCAGGGTGCCGACAGTGGCCTTGAAACCGGCCTCGGTGGCTGCGCGGACGCCGCCTTCGAAGACAAGGGCAATGACATCGCCCA > 1:121181/1‑150 GCCTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTTTGGCAGGGTGCCGACAGTGGCCTTGAAACCGGCCTCGGTGGCTGCGCGGACGCCGCCTTCGAAGCCATCGGCAATGACATCGCCCAA < 1:1288118/150‑1 GCCTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTTTGGCAGGGTGCCGACAGTGGCCTTGAAACCGGCCTCGGTGGCTGCGCGGACGCCGCCTTCGAAGCCATCGGCAATGACATCGCCCAA < 2:2305425/150‑1 GCCTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTTTGGCAGGGTGCCGACAGTGGCCTTGAAACCGGCCTCGGTGGCTGCGCGGACGCCGCCTTCGAAGCCATCGGCAATGACATCGCCCAA > 1:1837458/1‑150 GCCTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTTTGGCAGGGTGCCGACAGTGGCCTTGAAACCAGCCTCGGTGGCTGCGCGGACGCCGCCTTCGAAGCCATCGGCAATGACATCGCCCAA < 1:142176/150‑1 CCTTTGTCGTGCGGCACCAGGGACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTTTGGCAGGGTGCCGACAGTGGCCTTGAAACCGGCCTCGGTGGCTGCGCGGACGCCGCCTTCGAAGCCATCGGCAATGACATCGCCCAAG < 1:1290240/150‑1 CCTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTTTGGCAGGGTGCCGACAGTGGCCTTGAAACCGGCCTCGGTGGCTGCGCGGACGCCGCCTTCGAAGCCATCGGCAATGACATCGCCCAAG > 2:1967228/1‑150 CCTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTTTGGCAGGGTGCCGACAGTGGCCTTGAAACCGGCCTCGGTGGCTGCGCGGACGCCGCCTTCGAAGCCATCGGCAATGACATCGCCCAAG < 2:1491857/150‑1 CCTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTTTGGCAGGGTGCCGACAGTGGCCTTGAAACCGGCCTCGGTGGCTGCGCGGACGCCGCCTTCGAAGCCATCGGCAATGACATCGCCCAAG < 2:914789/150‑1 CTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTTTGGCAGGGTGCCGACAGTGGCCTTGAAACCGGCCTCGGTGGCTGCGCGGACGCCGCCTTCGAAGCCATCGGCAATGACATCGCCCAAGG > 1:549839/1‑150 TATCAACGGCGTGTATGCCTTGGGCGATGTCATTGCCGATGGCTTCGAAGGCGGCGTCCGCGCAGCCACCGAGGCCGGTTTCAAGGCCACTGTCGGCACCCTGCCAAAAACAGTGGCGCGCAAGGAAGAGGCCACTGTGGCACTGTTCCTGGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/391112‑391267‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgccTTTGTCGTGCGGCACCAGGAACAGTGCCACAGTGGCCTCTTCCTTGCGCGCCACTGTTTTTGGCAGGGTGCCGACAGTGGCCTTGAAACCGGCCTCGGTGGCTGCGCGGACGCCGCCTTCGAAGCCATCGGCAATGACATCGCCCAAGG < NC_002947/391277‑391129 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |