New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 445062 = | 70 (0.750) | 11 (0.150) | 10/196 | NT | 18.2% | intergenic (+32/‑256) | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase |
? | NC_002947 | 445155 = | 44 (0.600) | intergenic (+125/‑163) | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase |
CTCAGCTTTCTGTCAAGGATGGACTATGGTGCCATTTACGCCACGAAAAATGGCAAATCAGTCATGCCATGCCACAAACCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/445233‑445062 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTCACC > NC_002947/445155‑445302 CTCAGCTTTCTGTCAAGGATGGACTATGGTGCCATTTACGCCACGAAAAATGGCAAATCAGTCATGCCATGCCACAAACCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGC > 2:2340438/1‑150 TCAGCTTTCTGTCAAGGATGGACTATGGTGCCATTTACGCCACGAAAAATGGCAAATCAGTCATGCCATGCCACAAACCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCG > 1:1769468/1‑150 CAGCTTTCTGTCAAGGATGGACTATGGTGCCATTTACGCCACGAAAAATGGCAAATCAGTCATGCCATGCCACAAACCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGG < 1:1039513/150‑1 CAGCTTTCTGTCAAGGATGGACTATGGTGCCATTTACGCCACGAAAAATGGCAAATCAGTCATGCCATGCCACAAACCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGG < 2:1617182/150‑1 CAGCTTTCTGTCAAGGATGGACTATGGTGCCATTTACGCCACGAAAAATGGCAAATCAGTCATGCCATGCCACAAACCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGG < 1:448337/150‑1 CAGCTTTCTGTCAAGGATGGACTATGGTGCCATTTACGCCACGAAAAATGGCAAATCAGTCATGCCATGCCACAAACCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGG < 1:2340438/150‑1 CAGCTTTCTGTCAAGGATGGACTATGGGGCCATTTACGCCACGAAAAATGGCAAATCAGTCATGCCATGCCACAAACCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGG < 2:288261/150‑1 CTTTCTGTCAAGGATGGACTATGGTGCCATTTACGCCACGAAAAATGGCAAATCAGTCATGCCATGCCACAAACCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGGGCA > 1:922021/1‑150 CTGTCAAGGATGGACTATGGTGCCATTTACGCCACGAAAAATGGCAAATCAGTCATGCCATGCCACACACCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCC < 1:642903/150‑1 TGTCAAGGATGGACTATGGTGCCATTTACGCCACGAAAAATGGCAAATCAGTCATGCCATGCCACAAACCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCCC < 2:2281003/150‑1 TCATGCCATGCCACAAACCCTTGTAGGAGCGGGCTTGCCCGCGAGGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGG < 1:2022639/91‑1 TCATGCCATGCCACAAACCCTTGTAGGAGCGGGCTTGCCCGCGAGGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGG > 2:2022639/1‑91 CCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGGCGCATTCGCGGGCCAGCCCGCTCCTACAAGGGGTTGTGGGATGGCATGACTGAGTTGCCCTTTTTCTTGGCGGAAATGGCACCCTAGT > 2:1781413/1‑150 TTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTT > 1:2054810/1‑109 TTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTT < 2:2054810/109‑1 GCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGG < 2:1360800/55‑1 GCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGG > 1:1360800/1‑55 CCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGAGTGATTTATATTTAGCCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTG > 2:664355/1‑150 CCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTG > 2:1701452/1‑150 GAAGAGGCCCGANCAGANAAAATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCC < 1:345457/62‑1 GAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCC > 2:345457/1‑62 GACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGA < 2:648840/126‑1 GACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGA > 1:648840/1‑126 ACAAAATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAA > 1:2066372/1‑150 GTTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTT < 2:2066372/150‑1 GATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGG > 1:1786030/1‑150 GGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTC > 2:1734962/1‑150 gaGCGGGCTTGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGA > 2:694898/3‑104 cgctGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTA < 1:229231/109‑1 CGCTGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTA > 2:229231/1‑113 GGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAAAATCCTTTTGATCGGCTTCCGCCAAGCGCGGG < 1:1243545/150‑1 GCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGT > 2:902370/1‑150 AAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCA > 2:1538756/1‑150 GCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCAC < 1:1218357/67‑1 GCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCAC > 2:1218357/1‑67 GCCCGCTCCTACAAGGGTTTGTGGCATGGAATGACTGATTTGTCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACC < 1:1981859/150‑1 CGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCg < 1:1613333/150‑2 CGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCA > 2:921569/1‑150 GCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTG < 1:801805/115‑1 GCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTG > 2:801805/1‑115 GCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTC > 2:1705248/1‑106 GCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTC < 1:1705248/106‑1 CTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAA > 1:1811360/1‑150 CTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAA < 2:448337/150‑1 CTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAACTATTTTTCAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAA > 1:1330459/1‑150 TACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGGTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAAC > 1:2251262/1‑150 acgacGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACT > 2:1807835/6‑150 ACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAA < 1:395021/106‑1 ACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAA > 2:395021/1‑106 CAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTC > 2:704257/1‑150 CAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTGTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTC > 2:1301711/1‑150 AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTATTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTCA < 1:1759525/150‑1 AGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTCAC < 2:2050089/150‑1 AGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTCAC < 1:1301711/150‑1 GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGGACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTCACC > 1:648087/1‑150 GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTCACC < 2:648087/150‑1 GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTCACC < 1:684397/150‑1 GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATC < 2:377558/112‑1 GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATC > 1:1579185/1‑112 GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATC < 2:1579185/112‑1 GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATC > 1:377558/1‑112 CTCAGCTTTCTGTCAAGGATGGACTATGGTGCCATTTACGCCACGAAAAATGGCAAATCAGTCATGCCATGCCACAAACCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/445233‑445062 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTCACC > NC_002947/445155‑445302 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |