| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 741972 | NA (NA) | 4 (0.040) | 4/242 | NT | NA | coding (70/1422 nt) | PP_0635 | group II intron‑encoding maturase |
| ? | NC_002947 | = 741999 | NA (NA) | coding (97/1422 nt) | PP_0635 | group II intron‑encoding maturase | |||||
AAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/741820‑741972‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcaCCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGG < NC_002947/741999‑741851 AAAGGCGACGGGATGAGCGTGCAGAGAGAAAACGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG > 1:1880595/1‑150AAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG > 2:2429184/1‑150AAAGGCGACGGGACGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACAGCGCCACCAAGAGCCGAACAGTGTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG > 1:886458/1‑150 AAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGT > 1:1090314/1‑150 AAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGT > 1:2372593/1‑150 AAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGT > 1:219890/1‑150 AGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCGCCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTC > 2:985862/1‑150 AGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTC > 2:1525827/1‑150 AGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTC < 2:2386066/150‑1 AGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTC < 1:342472/150‑1 GGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCA > 2:1935692/1‑150 GGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCA < 1:1387890/150‑1 AGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGAGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG < 2:2225310/128‑1 AGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGAGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG > 1:2225310/1‑128 GAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGA < 2:1979438/150‑1 AGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACA < 2:384618/150‑1 CCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGAC < 1:2267232/119‑1 CCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGAC > 2:2267232/1‑119 CCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGT < 1:1754618/65‑1 CCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGT > 2:1754618/1‑65 GTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTT < 1:563814/150‑1 GTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTT > 2:2374276/1‑150 TCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTC < 2:783321/150‑1 TCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCG > 2:1591239/1‑110 TCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCG < 1:1591239/110‑1 CACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCG < 1:1596602/150‑1 ACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCCAGTTCTGTGCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGG < 1:1637254/150‑1 ACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGG < 2:767579/150‑1 ACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGG > 1:1013271/1‑150 ACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGG < 2:1796058/150‑1 ACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGG < 2:1426987/150‑1 ACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTAC > 2:292867/1‑142 ACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTAC < 1:292867/142‑1 AAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/741820‑741972‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcaCCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGG < NC_002947/741999‑741851 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |