| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 917692 = | 91 (0.980) | 9 (0.110) | 6/228 | NT | 10.1% | intergenic (‑123/+76) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D |
| ? | NC_002947 | 917754 = | 78 (0.920) | intergenic (‑185/+14) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D | |||||
CAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/917848‑917692‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcctacaCTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCAC > NC_002947/917754‑917901 CAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGC > 2:2152241/1‑150CAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGC < 1:2290710/150‑1 AGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCT > 2:777575/1‑150 GGGTTATGCGTCGATCGACAGCCCCAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTC < 2:554844/150‑1 GTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCT < 2:66587/150‑1 TTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTA < 2:303383/150‑1 TTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCCCCTA < 1:562167/150‑1 TTATGCGGCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTA < 1:91248/150‑1 TCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTC > 2:334006/1‑136 TCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTC < 1:334006/136‑1 TTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTAC < 1:406746/72‑1 TTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTAC > 2:406746/1‑72 CCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATC < 1:231948/125‑1 CCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATC > 2:231948/1‑125 TAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAA > 1:1590174/1‑150 GGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACC > 2:2191604/1‑150 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACTCCTGACCCTTGCTGCCGCGG > 2:123194/1‑150 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGG > 1:680569/1‑150 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGG > 1:1159417/1‑150 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGG > 2:1196103/1‑150 GAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGG < 2:1159417/150‑1 CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGCTTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTG > 2:1165158/1‑118 CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCT > 1:1564805/1‑150 CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTG < 1:1165158/118‑1 CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGAT < 2:1637718/91‑1 CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGAT > 1:1637718/1‑91 CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGGTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCT > 2:2056457/1‑150 CTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGA > 2:496116/1‑150 CTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTG > 2:686331/1‑115 CTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTG < 1:686331/115‑1 TCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACTATTACCCGCAGTTCATCGTTGTCGCCGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAG < 1:1344746/150‑1 TCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAG < 2:1494187/150‑1 TCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAG < 1:1350397/150‑1 CTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGT > 1:901747/1‑150 TACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTC < 1:496116/150‑1 TACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTG > 1:343047/1‑76 TACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTG < 2:343047/76‑1 ACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCA < 2:281692/150‑1 CACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCAC < 1:1508724/150‑1 CACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCAC < 2:901747/150‑1 CACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGT < 1:1378834/112‑1 CACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGT > 2:1378834/1‑112 CAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/917848‑917692‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcctacaCTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCAC > NC_002947/917754‑917901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |