New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1037774 =	61 (0.650)	17 (0.220)	9/204	NT	29.9%	intergenic (+16/+100)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
	?	NC_002947	1037852 =	30 (0.390)					intergenic (+94/+22)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase

CGGTACACATCACTGGCCCTGCCCTGTGGCAGAGCAAGATTGCCGAAAGCCTGGCCGTCGAAGTGAAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1037944‑1037774 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggagcgggcttgcccgcgaagCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTCGAACTCG  >  NC_002947/1037852‑1038000                                                                                                                                                                                                                                                                                                                                  CGGTACACATCACTGGCCCTGCCCTGTGGCAGAGCAAGATTGCCGAAAGCCTGGCCGTCGAAGTGAAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTG                                                                                                                                                                            <  2:2113146/150‑1  GGTACACATCACTGGCCCTGCCCTGTGGCAGATCAAGATTGCCGAAAGCCTGGCCGTCGAAGTGAAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGG                                                                                                                                                                           >  2:1349788/1‑150  GGTACACATCACTGGCCCTGCCCTGTGGCAGAGCAAGATTTCCGAAAGCCTGGCCGTCGAAGTGAAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGG                                                                                                                                                                           <  1:623297/150‑1   GTACACATCACTGGCCCTGCCCTGTGGCAGAGCAAGATTGCCGAAAGCCTGGCCGTCGAAGTGAAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGG                                                                                                                                                                          >  2:352374/1‑150      CACATCACTGGCCCTGCCCTGTGGCAGAGCAAGATTGCCGAAAGCCTGGCCGTCGAAGTGAAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGC                                                                                                                                                                       >  2:1133032/1‑150        CATCACTGGCCCTGCCCTGTGGCAGAGCAAGATTGCCGAAAGCCTGGCCGTCGAAGTGAAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGACCGTGGTATCACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGTAGCGG                                                                                                                                                                     <  1:552544/150‑1                GCCCGGCCCTGTGGCAGAGCAAGATTGCCGAAAGCCTGGCCGTCGAAGTGAAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCC                                                                                                                                                             <  1:288124/150‑1                                   CAAGATTGCCGAAAGCCTGGCCGTCGAAGTGAAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGG                                                                                                                                                                           <  1:2053985/117‑1                                   CAAGATTGCCGAAAGCCTGGCCGTCGAAGTGAAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGG                                                                                                                                                                           >  2:2053985/1‑117                                                         GTCGAAGTGAAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGC                                                                                                                                                                   >  1:1579483/1‑103                                                         GTCGAAGTGAAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGC                                                                                                                                                                   <  2:1579483/103‑1                                                                  AAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCcaa                                                                                                                                                        >  2:484829/1‑102                                                                  AAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAA                                                                                                                                                        >  1:1634788/1‑105                                                                  AAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAA                                                                                                                                                        <  2:1634788/105‑1                                                                          TGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTT                                                                                                                                                                             <  2:2246568/76‑1                                                                          TGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTT                                                                                                                                                                             >  1:2246568/1‑76                                                                            ATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGG                                                                                                                                                                     <  2:1059158/82‑1                                                                            ATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGG                                                                                                                                                                     >  1:1059158/1‑82                                                                                                     GGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCG                                                                                                     >  2:434554/1‑121                                                                                                     GGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCG                                                                                                     <  1:434554/121‑1                                                                                                        AAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGT                                                                     >  1:2358345/1‑150                                                                                                            CCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGCAGCGGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGT                                                                     >  2:1866486/1‑146                                                                                                            CCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGCAGCGGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGT                                                                     <  1:1866486/146‑1                                                                                                            CCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATG                                                                 >  2:2250954/1‑150                                                                                                            CCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGC                                                                                           <  2:2342196/124‑1                                                                                                            CCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGC                                                                                           >  1:2342196/1‑124                                                                                                            CCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATG                                                                 >  1:1042072/1‑150                                                                                                             CGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGTTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGT                                                                >  1:1344091/1‑150                                                                                                                 CCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTAGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTAC                                                            >  1:1866959/1‑150                                                                                                                 CCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTAC                                                            <  2:1042072/150‑1                                                                                                                    ACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCG                                                                                                     >  1:1676407/1‑106                                                                                                                    ACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCG                                                                                                     <  2:1676407/106‑1                                                                                                                              CGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGTTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTG                                               <  2:1344091/150‑1                                                                                                                                   GCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTAGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTC                                          <  2:1866959/150‑1                                                                                                                                             TACGCATTTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACG                                <  1:2250954/150‑1                                                                                                                                                     TGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGG                        <  1:1598842/150‑1                                                                                                                                                      GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGC                       >  2:1732986/1‑150                                                                                                                                                       GGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCA                      >  1:1641301/1‑150                                                                                                                                                         AGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATG                    <  2:472403/150‑1                                                                                                                                                              GCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTT               <  2:786449/150‑1                                                                                                                                                              GCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTT               <  1:1619458/150‑1                                                                                                                                                              GCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTT               >  1:176986/1‑150                                                                                                                                                                TTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGA             >  1:1918203/1‑150                                                                                                                                                                    CCGCGAAGCAGCCGCCGCAGTTACATCAGGTTGCTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGC                                                                                      <  2:2049580/73‑1                                                                                                                                                                    CCGCGAAGCAGCCGCCGCAGTTACATCAGGTTGCTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGC                                                                                      >  1:2049580/1‑73                                                                                                                                                                    CCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTC         >  1:125578/1‑150                                                                                                                                                                    CCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTC         >  1:1738027/1‑150                                                                                                                                                                    CCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTT                                                                                                                           <  2:1793564/36‑1                                                                                                                                                                    CCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTT                                                                                                                           >  1:1793564/1‑36                                                                                                                                                                       CGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTCGAA      <  1:1096058/150‑1                                                                                                                                                                         AAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACGGCGAACc    >  1:1283055/1‑149                                                                                                                                                                          AGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTCGAACTC   >  2:1295015/1‑150                                                                                                                                                                           GCAGCCGCCGCAGTTACATCAGGTTACTTCAATTGGACGGCCAGGAGTTCGGCAATCTTGCCCTGCCACAGGGCAGGGGCAGTGATGTGTACCGATTCACCGCTGCTGTCCACGGCGACGGTCACCGGCCTGTCCTTGACTTCGAACCCG  >  2:467291/1‑150                                                                                                                                                                                                                                                                                                                                  CGGTACACATCACTGGCCCTGCCCTGTGGCAGAGCAAGATTGCCGAAAGCCTGGCCGTCGAAGTGAAGTAACCTGATGTAACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1037944‑1037774 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggagcgggcttgcccgcgaagCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTCGAACTCG  >  NC_002947/1037852‑1038000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.