New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1114899	31 (0.330)	11 (0.150)	8/200	NT	32.4%	intergenic (‑88/+91)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	= 1114925	21 (0.280)					intergenic (‑114/+65)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase

CAGGGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1114727‑1114899 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgacacaaggccgctcccacaggaCGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAACCCACCCTGCACCCG  <  NC_002947/1114925‑1114782                                                                                                                                                                                                                                                                                                                               CAGGGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGC                                                                                                                                                                         <  2:2193671/150‑1   GGGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGA                                                                                                                                                                       <  2:1612712/150‑1          CCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGG                                                                                                                                                                <  2:2135476/150‑1           CTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGC                                                                                                                                                               <  1:931453/150‑1                  AGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCC                                                                                                                                                        >  1:1919011/1‑150                   GGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCA                                                                                                                                                       <  2:716858/150‑1                    GCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGTGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCAC                                                                                                                                                      <  1:579014/150‑1                      TGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAG                                                                                                                                                    >  1:2153383/1‑150                        GGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGC                                                                                                                                                               >  1:1675003/1‑137                        GGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGC                                                                                                                                                               <  2:1675003/137‑1                                          gccTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGC                                                                                                                                                               >  1:1706287/4‑119                                          gcaTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGC                                                                                                                                                               <  2:1706287/116‑1                                                  GTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACA                                                                                                                                                     <  1:1558868/121‑1                                                  GTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACA                                                                                                                                                     >  2:1558868/1‑121                                                        CGGGTGCAGAGTGGTTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCGGCCCTTTCGCGACACAAGGCCGATACCAAAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGT                                                                                                                  <  1:1354868/150‑1                                                         GGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTG                                                                                                                 >  2:1354868/1‑150                                                          GGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGG                                                                                                                <  1:696042/150‑1                                                                           TTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGT                                                                                                                  >  2:1191402/1‑131                                                                           TTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCNGT                                                                                                                  <  1:1191402/131‑1                                                                                                     TATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCC                                                                                                        <  1:812273/115‑1                                                                                                     TATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCC                                                                                                        >  2:812273/1‑115                                                                                                                          ACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGG                                                                                                                >  2:914017/1‑86                                                                                                                          ACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGG                                                                                                                <  1:914017/86‑1                                                                                                                               GGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGG                                                                                                                >  1:947280/1‑81                                                                                                                               GGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGG                                                                                                                <  2:947280/81‑1                                                                                                                                                         CACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGTAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAA                 >  1:823827/1‑150                                                                                                                                                         CACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAA                 <  1:1388680/150‑1                                                                                                                                                          ACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAAC                >  1:2034515/1‑150                                                                                                                                                            AAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAACCC              >  1:510924/1‑150                                                                                                                                                             AGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAACCCA             >  1:283825/1‑150                                                                                                                                                                 CGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGG                                                                      >  2:1846074/1‑89                                                                                                                                                                 CGCTCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGG                                                                      <  1:1846074/89‑1                                                                                                                                                                    TCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATCGGACTGGACACTGCCATGACCCCGAACAAACCCACCCTGCA      >  1:1204534/1‑150                                                                                                                                                                    TCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAACCCACCCTGCA      >  2:89813/1‑150                                                                                                                                                                    TCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGG                                                                      <  1:891357/86‑1                                                                                                                                                                    TCCCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGG                                                                      >  2:891357/1‑86                                                                                                                                                                      CCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAACCCACCCTGCACC    >  1:1155281/1‑150                                                                                                                                                                      CCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAA                     >  2:1343289/1‑133                                                                                                                                                                      CCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAA                     <  1:1343289/133‑1                                                                                                                                                                      CCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGC                                 >  2:1009942/1‑121                                                                                                                                                                      CCACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGC                                 <  1:1009942/121‑1                                                                                                                                                                        ACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAACCCACCCTGCACCCG  >  2:1919011/1‑150                                                                                                                                                                        ACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAACCCACCCTGCACCCG  >  1:283069/1‑150                                                                                                                                                                        ACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCAT                              <  2:2398725/122‑1                                                                                                                                                                        ACAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCAT                              >  1:2398725/1‑122                                                                                                                                                                                                                                                                                                                               CAGGGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1114727‑1114899 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgacacaaggccgctcccacaggaCGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAACCCACCCTGCACCCG  <  NC_002947/1114925‑1114782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.