| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1217615 = | 81 (0.870) | 4 (0.050) | 4/236 | NT | 5.2% | coding (801/918 nt) | metR‑I | homocysteine‑binding DNA‑binding transcriptional regulator |
| ? | NC_002947 | 1217648 = | 69 (0.780) | coding (768/918 nt) | metR‑I | homocysteine‑binding DNA‑binding transcriptional regulator | |||||
CAGCCGCCGTGCGTACCTCGGAGCTGACGGTGATGATGATGCAACTGGTGGCCAGCGGCCGTGGCGTGTGCGGCATGCCGCATTGGGCGCTGCACGAGTACAGCTCGCGCGGCTATGTGAAGGGCAAACGCCTGGGCGAGAAAGGCCTGTTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1217769‑1217615‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtttgccCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGCCACGGCCGCTGGCCACCAGTTGCATCATCATCACCGTCAGCTCCGAGGTACGCACGGCGGCTGGCTCGATATCGGCCGGCTCCAGGAAGC > NC_002947/1217648‑1217796 CAGCCGCCGTGCGTACCTCGGAGCTGACGGTGATGATGATGCAACTGGTGGCCAGCGGCCGTGGCGTGTGCGGCATGCCGCCTTGGGCGCTGCACGAGTACAGCTCGCGCGGCTATGTGAAGGGCAAACGCCTGGGCGAGAAAGGCCTGT > 2:153003/1‑150 AGCCGCCGTGCGTACCTCGGAGCTGACGGTGATGATGATGCAACTGGTGGCCAGCGGCCGTGGCGTGTGCGGCATGCCGCATTGGGCGCTGCACGAGTACAGCTCGCGCGGCTATGTGAAGGGCAAACGCCTGGGCGAGAAAGGCCTGTT < 1:1362103/150‑1 CGGTGATGATGATGCAACTGGTGGCCAGCGGCCGTGGCGTGTGCGGCATGCCGCATTGGGCGCTGCACGAGTACAGCTCGCGCGGCTATGTGAAGGGCAAACGCCTGGGCGAGAAAGGCCTGTTTGCC < 1:497662/128‑1 CGGTGATGATGATGCAACTGGTGGCCAGCGGCCGTGGCGTGTGCGGCATGCCGCATTGGGCGCTGCACGAGTACAGCTCGCGCGGCTATGTGAAGGGCAAACGCCTGGGCGAGAAAGGCCTGTTTGCC < 1:497924/128‑1 CGGTGATGATGATGCAACTGGTGGCCAGCGGCCGTGGCGTGTGCGGCATGCCGCATTGGGCGCTGCACGAGTACAGCTCGCGCGGCTATGTGAAGGGCAAACGCCTGGGCGAGAAAGGCCTGTTTGCC > 2:497924/1‑128 CGGTGATGATGATGCAACTGGTGGCCAGCGGCCGTGGCGTGTGCGGCATGCCGCATTGGGCGCTGCACGAGTACAGCTCGCGCGGCTATGTGAAGGGCAAACGCCTGGGCGAGAAAGGCCTGTTTGCC > 2:497662/1‑128 AACTGGTGGCCAGCGGCCGTGGCGTGTGCGGCATGCCGCATTGGGCGCTGCACGAGTACAGCTCGCGCGGCTATGTGAAGGGCAAACGCCTGGGCGAGAAAGGCCTGTTT > 2:661839/1‑110 AACTGGTGGCCAGCGGCCGTGGCGTGTGCGGCATGCCGCATTGGGCGCTGCACGAGTACAGCTCGCGCGGCTATGTGAAGGGCAAACGCCTGGGCGAGAAAGGCCTGTTT < 1:661839/110‑1 GAAGGGCAAACGCCTGGGCGAGAAAGGCCTGTTTGCCCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGCCACGGCCGCTGGCCACCAGTTGCATCATCATCACCGTCAGCTCCGAGGTACGCA > 2:2375842/1‑150 AGGGCAAACGCCTGGGCGAGAAAGGCCTGTTTGCCCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGC < 1:2031774/94‑1 AGGGCAAACGCCTGGGCGAGAAAGGCCTGTTTGCCCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGC > 2:2031774/1‑94 AAACGCCTGGGCGAGAAAGGCCTGTTTGCCCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGCCACGGCCGCTGGCCACCAGTTGCATCATCATCACCGTCAGCTCCGAGGTACGCACGGCGGC < 1:2375842/150‑1 GTTTGCCCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGCCACGGCCGCTGGCCACCAGTTGCATCATCATCACCGTCAGCTCCGAGGTACGCACGGCGGCTGGCTCGATATCGGCCGGCTCCA > 1:2278545/1‑150 GTTTGCCCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGCCACGGCCGCTGGCCACCAGTTGCATCATCATCACCGTCAGCTCCGAGGTACGCACGGCGGCTGGCTCGATATCGGCCGGCTCCA < 1:887395/150‑1 TTTGCCCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGCCACGGCCGCTGGCCACCAGTTGCATCATCATCACCGTCAGCTCCGAGGTACGCACGGCGGCTGTCTCGATATCGGCCGGCTCCAG < 2:910656/150‑1 TTTGCCCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGCCACGGCCGCTGGCCACCAGTTGCATCATCATCACCGTCAGCTCCGAGGTACGCACGGCGGCTGGCTCGATATCGGCCGGCTCCAG > 2:1149045/1‑150 GCCCTTCACATAGCCGCGCGAGCTGTCCTCGTGCAGCGCCCGATGCGGCATGCCGCACACGCCACGGCCGCTGGCAGCAAGTTGCATCATCATCACCTTCAGCAGCAGTTTACGCACGGCGGCTGGCTCGATATCGGCCGGCTCCAGGAA < 1:2254355/150‑1 CCCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGCCACGGCCGCTGGCCACCAGTTGCATCATCATCACCGTCCGCTCCGCGGTACGCACGGCGGCTGGCTCGATATCGGCCGGCCCCTGGAAG > 1:845145/1‑150 CCCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGCCACGGCCGCTGGCCACCAGTTGCATCATCATCACCGTCAGCTCCGAGGTACGCACGGCGGCTGGCTCGATATCGGCCGGCTCCAGGAAG < 2:2279835/150‑1 CCCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGCCACGGCCGCTGGCCACCAGTTGCATCATCATCACCGTCAGCTCCGAG > 1:1211005/1‑108 CCCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGCCACGGCCGCTGGCCACCAGTCGCATCATCATCACCGTCAGCTCCGAG < 2:1211005/108‑1 CCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGCCACGGCCGCTGGCCACCAGTTGCATCATCATCACCGTCAGCTCCGAGGTACGCACGGCGGCTGGCTCGATATCGGCCGGCTCCAGGAAGC > 2:2360051/1‑150 CAGCCGCCGTGCGTACCTCGGAGCTGACGGTGATGATGATGCAACTGGTGGCCAGCGGCCGTGGCGTGTGCGGCATGCCGCATTGGGCGCTGCACGAGTACAGCTCGCGCGGCTATGTGAAGGGCAAACGCCTGGGCGAGAAAGGCCTGTTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1217769‑1217615‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtttgccCTTCACATAGCCGCGCGAGCTGTACTCGTGCAGCGCCCAATGCGGCATGCCGCACACGCCACGGCCGCTGGCCACCAGTTGCATCATCATCACCGTCAGCTCCGAGGTACGCACGGCGGCTGGCTCGATATCGGCCGGCTCCAGGAAGC > NC_002947/1217648‑1217796 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |