New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1356014 =	78 (0.840)	6 (0.070)	6/240	NT	8.1%	intergenic (+275/‑117)	PP_1180/PP_1181	hypothetical protein/two‑component system response regulator
	?	NC_002947	1356073 =	61 (0.680)					intergenic (+334/‑58)	PP_1180/PP_1181	hypothetical protein/two‑component system response regulator

TCGACGATGAGGATGCGGGGTATGGGGTGGTCCATGGCTTTGGCCTTGTTGTTCTTGGGATCGTGTCAGGGCAGCTGAGAGTATGAATGTAGATGGGGGGCCCTGCGAGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCCCA‑GGCACCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1356165‑1356014 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccaTCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCTGCAGGCCAATGGTTTCG  >  NC_002947/1356073‑1356221                                                                                                                                                                                                                                                                                                                TCGACGATGAGGATGCGGGGTATGGGGTGGTCCATGGCTTTGGCCTTGTTGTTCTTGGGATCGTGTCAGGGCAGCTGAGAGTAGGAATGTAGATGGGGGGCCCTGCGAGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCCCA‑GGCACCC                                                                                                                                                         <  2:719774/150‑1  CGACGATGAGGATGCGGGGTATGGGGTGGTCCATGGCTTTGGCCTTGTTGTTCTTGGGATCGTGTCAGGGCAGCTGAGAGTATGAATGTAGATGGGGGGCCCTGCGAGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCCCA‑GGCACCCC                                                                                                                                                        <  1:1358288/150‑1                                                    TTCTTGGGATCGTGTCAGGGCAGCTGAGAGTATGAATGTAGATGGGGGGCCCTGCGAGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCCCA‑GGCACCCCA                                                                                                                                                       <  2:385416/101‑1                                                    TTCTTGGGATCGTGTCAGGGCAGCTGAGAGTATGAATGTAGATGGGGGGCCCTGCGAGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCCCA‑GGCACCCCA                                                                                                                                                       >  1:385416/1‑101                                                                                      AATGTAGATGGGGGGCCCTGCGAGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCCCA‑GGCACCCCATCTACATTAATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCC                                                                    >  1:1951409/1‑150                                                                                                GGGGGCCCTGCGAGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCCCA‑GGCACCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGA                                                          >  1:844848/1‑150                                                                                                    GCCCTGCGAGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCCCA‑GGCACCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGAC                                                      >  1:2313325/1‑150                                                                                                           GAGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCCCA‑GGCACCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGCCCAGC                                               <  2:2313325/150‑1                                                                                                            AGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGAC                                                                                       <  2:83900/110‑1                                                                                                            AGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGAC                                                                                       >  1:83900/1‑110                                                                                                                                                     CCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCCAGAACGACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCTGCAGGCCAATGGT      <  1:2091422/150‑1                                                                                                                                                     CCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCTGCAGGCCAATGGT      >  2:770320/1‑150                                                                                                                                                     CCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAAT                       <  2:1008116/133‑1                                                                                                                                                     CCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAAT                       >  1:1008116/1‑133                                                                                                                                                       CCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCTGCAGGCCAATGGTTT    >  2:641390/1‑150                                                                                                                                                        CATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGACCAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGCAGTCTCTCAGCTCCGCGCCGAACTCACCGCCGAATACCTGCAGGCCAATGGTTTC   <  1:1003812/150‑1                                                                                                                                                        CATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCTGCAGGCCAATGGTTTC   <  1:1755325/150‑1                                                                                                                                                         ATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCTGCAGGCCAATGGTTTCG  >  2:2279299/1‑150                                                                                                                                                                                                                                                                                                                TCGACGATGAGGATGCGGGGTATGGGGTGGTCCATGGCTTTGGCCTTGTTGTTCTTGGGATCGTGTCAGGGCAGCTGAGAGTATGAATGTAGATGGGGGGCCCTGCGAGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCCCA‑GGCACCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1356165‑1356014 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccaTCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCTGCAGGCCAATGGTTTCG  >  NC_002947/1356073‑1356221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.