| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1392884 = | 52 (0.560) | 3 (0.050) | 4/176 | NT | 10.1% | intergenic (+48/‑138) | PP_1214/ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| ? | NC_002947 | 1392984 = | 17 (0.260) | intergenic (+148/‑38) | PP_1214/ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC | |||||
ATAGCCGGTGATGCGCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1393069‑1392884‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacctgtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGCTGCATC > NC_002947/1392984‑1393123 ATAGCCGGTGATGCGCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAAT > 2:2064363/1‑150 TAGCCGGTGATGCGCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATA < 2:1563373/150‑1 GTGATGCGCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTA < 1:779910/150‑1 TGATGCGCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAG < 1:1419204/150‑1 TGATGCGCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAG < 2:2297205/150‑1 CGCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCG < 2:2174782/150‑1 GCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGG < 2:1341663/150‑1 GCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGG < 2:938042/150‑1 GCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGG > 1:342578/1‑150 CGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGG < 2:2190912/150‑1 GGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCC < 1:2064363/150‑1 GTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGC < 2:342578/150‑1 TACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAG < 1:2346463/150‑1 cagGAATCAGAGACATAAACCCCGTCGAAAAAATGATGCATCTCTACAAACGGCGCCGGCCCTTTCGCGGGTAAACCCCCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCGGTAGGAGCGGGTTTACCCGCGAAAGGGC < 2:1783160/147‑1 GTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGA > 1:887431/1‑105 GTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGA < 2:887431/105‑1 GCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCC < 1:862517/82‑1 GCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCC > 2:862517/1‑82 CTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTAT < 1:2426848/133‑1 CTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTAT > 2:2426848/1‑133 TCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCAT > 1:2194299/1‑150 ACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTT < 1:2174782/150‑1 ACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCG < 2:1400653/126‑1 ACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCG > 1:1400653/1‑126 CTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGC > 2:956057/1‑150 TGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGT < 1:1672554/124‑1 TGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGT > 2:1672554/1‑124 TGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAG < 1:1955911/87‑1 TGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAG > 2:1955911/1‑87 GTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGA < 2:1419204/150‑1 TAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGA < 2:1299923/79‑1 TAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGA > 1:1299923/1‑79 GAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGCGTAC > 1:2168585/1‑150 AGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATCCATCATTTTTTTGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACG > 2:2284014/1‑150 GCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTG < 1:149373/118‑1 GCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTG > 2:149373/1‑118 GGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGC < 2:2346463/150‑1 GGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTAAACGTTCACGCCGCGGCTCGCGCATCACCGGCTATGGCGTGGTCCGCCAGACCGCCCCTGGTTGCGAGTACGTGGC > 1:413830/1‑150 GTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATT > 1:520612/1‑72 GTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATT < 2:520612/72‑1 GTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGACATGCAACCTCTTTTTTCTGGCGTTGATGACGCTGATGCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCG > 1:647316/1‑150 TTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGT > 2:485202/1‑150 TTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTA < 1:409397/142‑1 TTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTA > 2:409397/1‑142 CCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGC > 1:20081/1‑150 CCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGG < 2:1494158/71‑1 CCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGG > 1:1494158/1‑71 GAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGCTGCA > 2:2072581/1‑150 AAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGAC > 1:174357/1‑42 AAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGAC < 2:174357/42‑1 AAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGCTGCATC < 1:2447102/150‑1 GCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACC < 1:1591877/82‑1 GCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACC > 2:1591877/1‑82 ATAGCCGGTGATGCGCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1393069‑1392884‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacctgtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGCTGCATC > NC_002947/1392984‑1393123 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |