| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1799104 | 80 (0.860) | 6 (0.070) | 4/236 | NT | 6.9% | coding (985/1128 nt) | lpxB | lipid‑A‑disaccharide synthase |
| ? | NC_002947 | = 1799128 | 86 (0.980) | coding (1009/1128 nt) | lpxB | lipid‑A‑disaccharide synthase | |||||
CTGTACAAGCGGCCGATGGTAGTGGCGTACCGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1798951‑1799104‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagcgGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTAGCGTCGTCCTGCAGCAACTCGGGCACCAGCTCTCGCTGGGCCAGCAGGTTCGGCAATGACACGTAAGGGCTTTTCACCAGACGCTTGAGAATCCAGAAGGTCAAGGGCGCCAGGCGG < NC_002947/1799128‑1798980 CTGTACAAGCGGCCGATGGTAGTGGCGTACCGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACC < 1:1414078/150‑1 GCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCAAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGC > 1:2049770/1‑150 GCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCAAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTA < 2:2049770/150‑1 CAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAG < 1:148341/93‑1 CAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAG > 2:148341/1‑93 CCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTAGCG > 1:2010978/1‑82 CCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTAGCG > 1:773474/1‑82 CCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTAGCG < 2:2010978/82‑1 CCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTAGCG < 2:773474/82‑1 CAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTAGCGTCGTCCTGCAGCAACTCGGGCACCAGCTCTCGCTGGGCCAGCAGGTTCGGCAATGACACGTAAGGGCTTTTCACCAGACGCTTGAGAATCCAGAAGGTCAAGGGCGCCAG > 1:1070503/1‑150 CGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTAGCGTCGTCCTGCCTTAACTCGGGCACCAGCTCTCGCTGGGCCAGCAGGTTCGGCAATGACACGTAAGGGCTTTTCACCAGACGCTTGAGAATCCAGAAGGTCAAGGGCGCCAGGCG < 1:1452740/150‑1 GGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGGAGCGTCGTCCTGCAGCAACTCGGGCACCAGCTCTCGCTGGGCCAGCAGGTTCGGCAATGACACGTAAGGGCTTTTCACCAGACGCTTGAGAATCCAGAAGGTCAAGGGCGCCAGGCGG < 2:943626/150‑1 CTGTACAAGCGGCCGATGGTAGTGGCGTACCGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1798951‑1799104‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagcgGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTAGCGTCGTCCTGCAGCAACTCGGGCACCAGCTCTCGCTGGGCCAGCAGGTTCGGCAATGACACGTAAGGGCTTTTCACCAGACGCTTGAGAATCCAGAAGGTCAAGGGCGCCAGGCGG < NC_002947/1799128‑1798980 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |