New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1968100	96 (1.030)	8 (0.100)	5/224	NT	8.1%	intergenic (‑68/+90)	yciK/gph	putative oxidoreductase/phosphoglycolate phosphatase
	?	NC_002947	= 1968131	96 (1.150)					intergenic (‑99/+59)	yciK/gph	putative oxidoreductase/phosphoglycolate phosphatase

CCTTGGCAGCCGCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1967939‑1968100 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaatgcgCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCATTCGCGGGTAAACCCGCTCCTACGATAGGCCCAGGCCGCCCACACGAACTCGAAGGACAGAACCATGTTCGACTACACCGCCCGCCCCGACCTGCTGCAAGGCCGGGTCATCCT  <  NC_002947/1968131‑1967983                                                                                                                                                                                                                                                                                                                         CCTTGGCAGCCGCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTA                                                                                                                                                                   >  1:547516/1‑150  CTTGGCAGCCGCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTAC                                                                                                                                                                  <  1:1377236/150‑1       CAGCCGCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCG                                                                                                                                                             >  1:2393268/1‑150         GCCGCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                           <  1:993051/150‑1          CCGCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACTCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAAT                                                                                                                                                          <  2:818335/150‑1            GCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGC                                                                                                                                                        <  1:2000463/150‑1            GCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGC                                                                                                                                                        <  2:2393268/150‑1                   CAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCAGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGCCAGCC                                                                                                                                                 >  2:1259711/1‑150                        CCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTAC                                                                                                                                                                  >  2:2436026/1‑128                        CCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTAC                                                                                                                                                                  <  1:2436026/128‑1                                               GATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGCCAGCCCGGACAACCCTGGCGCCTGATCGGNCGC                                                                                                                     <  2:1505901/150‑1                                                       GGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTCACCCGCGAATGCGCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCATTCGCGG                                                                                                             <  1:1639196/150‑1                                                       GGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTCACCCGCGAATGCGCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCATTCGCGG                                                                                                             >  2:2185848/1‑150                                                          CTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCATTCGCGGGTA                                                                                                          >  1:813830/1‑150                                                            TGCAGCAGGTCAGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCATTCGCGGGTAAA                                                                                                        <  1:1259711/150‑1                                                              CAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCATTCGCGGGTAAACC                                                                                                      <  2:813830/150‑1                                                                   GGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTCACCCGCGAATGCGCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCATTCGCGGGTAAACCCGCTC                                                                                                 <  1:2185848/150‑1                                                                                                                                                     cactCGCGAATGCGCCTGCCCGGACAACCCTCGCGCCTGATCGGACGCATTCGCGGGTAAACCCGCTCCTACGATAGGCCCAGGCCGCCCACACGAACTCGAAGGATAGAACCATGTTCGACTACACCGCCCGCCCCGACCTGCTGCAAG               <  2:476455/146‑1                                                                                                                                                        CCGCGAATGCGCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCATTCGCGGGTAAACCCGCTCCTACGATAGGCCCAGGCCGCCCACACGAACTCGAAGGACAGAACCATGTTCGACTACACCGCCCGCCCCGACCTGCTGCAAGGCC            >  1:1508936/1‑150                                                                                                                                                        CCGCGAATGCGCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCATTCGCGGGTAAACCCGCTCCTACGATAGGCCCAGGCCGCCCACACGAACTCGAAGGACAGAACCATGTTCGACTACACCGCCCGCCCCGACCTGCTGCAAGGCC            >  1:2205536/1‑150                                                                                                                                                         CGCGAATGCGCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCATTCGCGGGTAAACCCGCTCCTACGATAGGCCCAGGCCGCCCACACGAACTCGAAGGACAGAACCATGTTCGACTACACCGCCCGCCCCGACCTGCTGCAAGGCCG           >  1:1935529/1‑150                                                                                                                                                          GCGAATGCGCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCCTTCGCGGGTAAACCCGCTCCTACGATAGGCCCAGGCCGCCCACACGAACTCGAAGGACAGAACCATGTTCGACTACACCGCCCGCCCCGACCTGCTGCAAGGCCGG          <  2:2276199/150‑1                                                                                                                                                          GCGAATGCGCCAGCCCGGACAACCCTGACGCCGGATCGGACGCATTCGCGGGTAAACCCGCTCCTACGATAGGCCCAGGCCGCCCACACGAACTCGAAGGACAGAACCATGTTCGACTACACCGCCCGCCCCGACCTGCTGCAAGGCCGG          <  2:1765107/150‑1                                                                                                                                                               TGCGCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCATTCGCGGGTAAACCCGCTCCTACGATAGGCCCAGGCCGCCCACACGAACTCGAAGGACAGAACCATGTTCGACTACACCGCCCGCCCCGACCTGCTGCAAGGCCGGGTCAT     <  1:720118/150‑1                                                                                                                                                                GCGCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCATTCGCGGGTAAACCCGCTCCTACGATAGGCCCAGGCCGCCCACACGAACTCGAAGGACAGAACCATGTTCGACTACACCGCCCGCCCCGACCTGCTGCAAGGCCGGGTCATC    <  2:1935529/150‑1                                                                                                                                                                  GCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCATTCGCGGGTAAACCCGCTCCTACGATAGGCCCAGGCCGCCCACACGAACTCGAAGGACAGAACCATGTTCGACTACACCGCCCGCCCCGACCTGCTGCAAGGCCGGGTCATCCT  >  1:597877/1‑150                                                                                                                                                                                                                                                                                                                         CCTTGGCAGCCGCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1967939‑1968100 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaatgcgCCAGCCCGGACAACCCTGGCGCCTGATCGGACGCATTCGCGGGTAAACCCGCTCCTACGATAGGCCCAGGCCGCCCACACGAACTCGAAGGACAGAACCATGTTCGACTACACCGCCCGCCCCGACCTGCTGCAAGGCCGGGTCATCCT  <  NC_002947/1968131‑1967983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.