| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1996399 = | 110 (1.180) | 8 (0.090) | 7/240 | NT | 7.5% | coding (232/549 nt) | rfbC | dTDP‑4‑dehydrorhamnose 3,5‑epimerase |
| ? | NC_002947 | 1996436 = | 91 (1.020) | coding (195/549 nt) | rfbC | dTDP‑4‑dehydrorhamnose 3,5‑epimerase | |||||
CGAGAGCTTCAACGCCCGTGTTTTCAGCGAAGTGACCGGCCTGCAGCCCGACTTCGTACAAGACAACCACTCGCGCTCGGTAAAAGGCGTGCTCCGTGGCCTGCACTATCAGCTGGCACCTCACGCCCAGGGCAAGCTGGTGCGTGTGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1996550‑1996399‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgcCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTACCGAGCGCGAGTGGTTGTCTTGTACGAAGTCGGGCTGCAGGCCGGTCACTTCGCTGAAAACACGGGCGTTGAAGCTCTCGTAGAAGAAACCACGTTCGTCGCCAAAAACCTTGG > NC_002947/1996436‑1996584 CGAGAGCTTCAACGCCCGTGTTTTCAGCGAAGTGACCGGCCTTCATCCCGACATCGTACCAGACAACCTCTCGCGCTCGGTAAAAGCCGTGCTCCGTGGCCTGCACTATCAGCTGGCACCTCACGCCCAGGGCAAGCTGGTGCGTGTGGT < 2:519842/150‑1CGAGAGCTTCAACGCCCGTGTTTTCAGCGAAGTGACCGGCCTGCAGCCCGACTTCGTACAAGACAACCACTCGCGCTCGGTAAAAGGCGTGCTCCGTGGCCTGCACTATCAGCTGGCACCTCACGCCCAGGGCAAGCTGGTGCGTGTGGT > 1:1608401/1‑150CGAGAGCTTCAACGCCCGTGTTTTCAGCGAAGTGACCGGCCTGCAGCCCGACTTCGTACAAGACAACCACTCGCGCTCGGTAAAAGGCGTGCTCCGTGGCCTGCACTATCAGCTGGCACCTCACGCCCAGGGCAAGCTGGTGCGTGTGGT < 2:519883/150‑1CGAGAGCTTCAACGCCCGTGTTTTCAGCGAAGTGACCGGCCTGCAGCCCGACTTCGTACAAGACAACCACTCGCGCTCGGTAAAAGGCGTGCTCCGTGGCCTGCACTATCAGCTGGCACCTCACACCCAGGGCAAGCTGGTGCGTGTGGT < 1:1540498/150‑1 CCTGCACTATCAGCTGGCACCTCACGCCCAGGGCAAGCTGGTGCGTGTGGTGCCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTACCGAGCGCGAGTGGTTGTCTTG < 2:1109389/110‑1 CCTGCACTATCAGCTGGCACCTCACGCCCAGGGCAAGCTGGTGCGTGTGGTGCCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTACCGAGCGCGAGTGGTTGTCTTG > 1:1109389/1‑110 GCACCTCACGCCCAGGGCAAGCTGGTGCGTGAGGTGCCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTAC > 1:1416923/1‑73 GCACCTCACGCCCAGGGCAAGCTGGTGCGTGAGGTGCCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTAC < 2:1416923/73‑1 ACCTCACGCCCAGGGCAAGCTGGTGCGTGTGGTGCCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTACCGAGCGCGAGTGGTTGTCTTGTACGAAGTCGGGCTGCAGGCCGGTCACTTCGCTGAAAACACGGGCGT < 2:925702/139‑1 ACCTCACGCCCAGGGCAAGCTGGTGCGTGTGGTGCCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTACCGAGCGCGAGTGGTTGTCTTGTACGAAGTCGGGCTGCAGGCCGGTCACTTCGCTGAAAACACGGGCGT > 1:925702/1‑139 CTCACGCCCAGGGCAAGCTGGTGCGTGTGGTGCCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTAC < 2:1392792/69‑1 CTCACGCCCAGGGCAAGCTGGTGCGTGTGGTGCCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTAC > 1:1392792/1‑69 GCCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTACCGAGCGCGAGTGGTTGTCTTGTACGAAGTCGGGCTGCAGGCCGGTCACTTCGCTGAAAACACGGGCGTTGAAGCTCTCGTAGAAGAAACCACGTTCGTCGCCAAAAACCTTG < 2:319848/150‑1 CCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTACCGAGCGCGAGTGGTTGTCTTGTACGAAGTCGGGCTGCAGGCCGGTCACTTCGCTGAAAACACGGGCGTTGAAGCTCTCGTAGAAGAAACCACGTTCGTCGCCAAAAACCTTGG < 2:811828/150‑1 CCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTACCGAGCGCGAGTGGTTGTCTTGTACGAAGTCGGGCTGCAGGCCGGTCACTTCGCTGAAAACACGGGCGTTGAAGCTCTCGTAGAAGAAACCACGTTCGTCGCCAAAAACCTTGG > 2:889530/1‑150 CCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTACCGAGCGCGAGTGGTTGTCTTGTACGAAGTCGGGCTGCAGGCCGGTCACTTCGCTGAAAACACGGGCGTTGAAGC < 2:2293721/111‑1 CCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTACCGAGCGCGAGTGGTTGTCTTGTACGAAGTCGGGCTGCAGGCCGGTCACTTCGCTGAAAACACGGGCGTTGAAGC > 1:2293721/1‑111 CGAGAGCTTCAACGCCCGTGTTTTCAGCGAAGTGACCGGCCTGCAGCCCGACTTCGTACAAGACAACCACTCGCGCTCGGTAAAAGGCGTGCTCCGTGGCCTGCACTATCAGCTGGCACCTCACGCCCAGGGCAAGCTGGTGCGTGTGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1996550‑1996399‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgcCAGCTGATAGTGCAGGCCACGGAGCACGCCTTTTACCGAGCGCGAGTGGTTGTCTTGTACGAAGTCGGGCTGCAGGCCGGTCACTTCGCTGAAAACACGGGCGTTGAAGCTCTCGTAGAAGAAACCACGTTCGTCGCCAAAAACCTTGG > NC_002947/1996436‑1996584 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |