New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2340736 =	89 (0.950)	13 (0.140)	11/248	NT	14.2%	intergenic (+27/‑88)	dctA‑II/yraO	C4‑dicarboxylate transport protein/transporter YraO
	?	NC_002947	2340767 =	69 (0.750)					intergenic (+58/‑57)	dctA‑II/yraO	C4‑dicarboxylate transport protein/transporter YraO

CGTTTACTCATGATCAGGTAGGTGAAGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCCGGCAACGCCTGGTGGGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2340885‑2340736 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCTGTCAC  >  NC_002947/2340767‑2340893                                                                                                                                                                                                                                                                                       CGTTTACTCATGATCAGGTAGGTGAAGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCCGGCAACGCCTGGTGGGGGCC                                                                                                                                 <  2:365016/150‑1                                    CATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCT                                                                                                                     <  1:50349/127‑1                                    CATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCT                                                                                                                     >  2:50349/1‑127                                                                                                                         ACCCCCACCCGGCAACGCCTGGTGGGGGCCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGA                                                                                               >  1:274296/1‑64                                                                                                                         ACCCCCACCCGGCAACGCCTGGTGGGGGCCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGA                                                                                               <  2:274296/64‑1                                                                                                                           CCCCACCCGGCAACGCCTGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCT       >  1:2396219/1‑150                                                                                                                           CCCCACCCGGCAACGCCTGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTT                                  >  1:1927455/1‑123                                                                                                                           CCCCACCCGGCAACGCCTGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTT                                  <  2:1927455/123‑1                                                                                                                            CCCACCCGGCAACGCCTGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTG                                          >  1:467120/1‑114                                                                                                                            CCCACCCGGCAACGCCTGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTG                                          <  2:467120/114‑1                                                                                                                            CCCACCCGGCAACGCCTGGTGGGGGCCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCTG      >  1:1956665/1‑150                                                                                                                             CCACCCGGCAACGCCTGGTGGGGGCCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCTGT     >  1:2152682/1‑150                                                                                                                                    GCAACGCCTGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCTGTCAC  <  1:642038/146‑1                                                                                                                                    GCAACGCCTGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCTGTCAC  >  2:642038/1‑146                                                                                                                                                                                                                                                                                       CGTTTACTCATGATCAGGTAGGTGAAGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCCGGCAACGCCTGGTGGGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2340885‑2340736 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCTGTCAC  >  NC_002947/2340767‑2340893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.